Locus 629

Sequence ID 3R_DroMel_CAF1
Location 2,319,492 – 2,319,588
Length 96
Max. P 0.627056
window1000

overview

Window 0

Location 2,319,492 – 2,319,588
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 85.83
Mean single sequence MFE -38.93
Consensus MFE -28.01
Energy contribution -28.92
Covariance contribution 0.90
Combinations/Pair 1.23
Mean z-score -2.86
Structure conservation index 0.72
SVM decision value 0.19
SVM RNA-class probability 0.627056
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2319492 96 + 27905053
CAGUAACUCGAUGUCAGCUCCACCGGGAAUACCGGUGAGCAGUGGACACCCCGAAGUAGGGGCCACUGCAUCGGCACCGCCCAGCACCACCCAUCA
.........((((...(((.((((((.....)))))).(((((((...((((......)))))))))))...)))...((...))......)))). ( -38.40)
>DroSec_CAF1 25229 96 + 1
CAGUAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAAAUAGGGGCCACAGCAUCGGCACCGCCCAGCACCACCCAUCA
.........((((...((.(((((((.....)))))))))(((((...((((......)))).....((...(((...)))..)).))))))))). ( -43.40)
>DroSim_CAF1 25391 96 + 1
CAGUAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAAAUAGGGGCCACAGCAUCGGCACCGCCCAGCACCACCCAUCA
.........((((...((.(((((((.....)))))))))(((((...((((......)))).....((...(((...)))..)).))))))))). ( -43.40)
>DroEre_CAF1 31043 96 + 1
CAGCAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGCGGACACCCCGAAGUAGGCGCUACUGCAUCGGCACCGCCCAGCACCACCCACCA
..((............((.(((((((.....)))))))))(((((.....((((.((((......)))).))))..)))))..))........... ( -40.20)
>DroYak_CAF1 25193 96 + 1
CAGCAACUCGAUGACAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAACUAGGGGCCACUGCAUCGGCACCGCCCAGCACCACCCACCA
..((.....((((.(.((.(((((((.....)))))))))(((((...((((......))))))))))))))(((...)))..))........... ( -40.90)
>DroAna_CAF1 27566 84 + 1
CAGCAAUUCUAUGACCC--CCUCUG---CCACCG-------GUGGACAUCCCGAGGUGGGGGCCACCGCCUCGGCACCGCCCAGUACCAGCCACCA
.................--...(((---..((.(-------((((.....(((((((((......)))))))))..)))))..))..)))...... ( -27.30)
>consensus
CAGCAACUCGAUGGCAGCUCCACCGGGAACACCGGUGGGCGGUGGACACCCCGAAGUAGGGGCCACUGCAUCGGCACCGCCCAGCACCACCCACCA
..((............((.(((((((.....)))))))))(((((....(((......)))(((........))).)))))..))........... (-28.01 = -28.92 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:52 2006