Locus 6289

Sequence ID 3R_DroMel_CAF1
Location 16,408,580 – 16,408,676
Length 96
Max. P 0.848923
window10257

overview

Window 7

Location 16,408,580 – 16,408,676
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.71
Mean single sequence MFE -21.68
Consensus MFE -15.56
Energy contribution -15.82
Covariance contribution 0.25
Combinations/Pair 1.18
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.78
SVM RNA-class probability 0.848923
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16408580 96 - 27905053
UCGUUUAAAAUUAACUACUUACAAUUGAUUGUUAAUUU--UUCUAUGCAGCUCAGCGUCAAUCUCAGCUUUCGGUUGUAGUUGUGCCCGUAAGCUGCA
......(((((((((...............))))))))--)....(((((((..(((.((((..((((.....))))..))))))).....))))))) ( -23.16)
>DroSec_CAF1 4209 95 - 1
UUAUUUAAAUUAAACUACUU-CGAUUGAUUGUUCAUUU--GUCUAUGCAGCUCAGCGUCAAUCUCAGCUUUCGGGUGUAGUUGUGCCCGUAAGCUGCA
....................-.(((((((.(((.(.((--((....)))).).)))))))))).((((((.((((..(....)..)))).)))))).. ( -26.10)
>DroSim_CAF1 4222 95 - 1
UUAUGUAUAUUGAACUACUU-CGAUUGAUUGUUCAUUU--GACUAUGCAGCUCAGCGUCAAUCUCAGCUUUCGGUUGUAGUUGUGCCCGUAAGCUGCA
....((....(((((....(-(....))..)))))...--.))..(((((((..(((.((((..((((.....))))..))))))).....))))))) ( -23.90)
>DroEre_CAF1 4280 95 - 1
UAAUUUUCAUUUAAUUCUUUACAAUUGAUUGUUU-UUU--GACUACGCAGCUCAGCGACAAUCUCAGCUUUCAGUUGUAGUUGUGCCCGUAAGCUGCA
.......((.((((((......)))))).))...-...--......((((((..((((((((..((((.....))))..)))))...))).)))))). ( -21.40)
>DroYak_CAF1 4271 96 - 1
UAAUUUAAAUAUAAUUCUUUACAAUUUAUUGUUUAUUU--GACUACGCAGCUCAGCAUCAAUCUCAGCUUUCAGUCGUGGUUGUGCCCGUAAGCUGCA
....(((((((.........((((....)))).)))))--))....((((((..(((.(((((.(.((.....)).).)))))))).....)))))). ( -19.40)
>DroAna_CAF1 3905 95 - 1
GAAUUUAAAUAAUCUUAUUUGC---UAAUCGGACAUUUCUAACACUAUAGCUCAGCGCCAAUCGCAGCUUUCAGUUGUUGUUGUGCCAGUUACUUGCA
...................(((---((((.((.(((..(.((((((..((((..(((.....)))))))...)).)))))..))))).))))...))) ( -16.10)
>consensus
UAAUUUAAAUUUAACUACUUACAAUUGAUUGUUCAUUU__GACUAUGCAGCUCAGCGUCAAUCUCAGCUUUCAGUUGUAGUUGUGCCCGUAAGCUGCA
..............................................((((((..(((.((((..((((.....))))..))))))).....)))))). (-15.56 = -15.82 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:46 2006