Locus 628

Sequence ID 3R_DroMel_CAF1
Location 2,318,888 – 2,318,999
Length 111
Max. P 0.916506
window999

overview

Window 9

Location 2,318,888 – 2,318,999
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 72.13
Mean single sequence MFE -45.10
Consensus MFE -13.38
Energy contribution -14.55
Covariance contribution 1.17
Combinations/Pair 1.17
Mean z-score -2.47
Structure conservation index 0.30
SVM decision value 1.11
SVM RNA-class probability 0.916506
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2318888 111 - 27905053
GAGCGAAAGAUGGCUCUUUUGGCAGCCGCCGAGGCGAGAGUCUUGUACAGGUGGCUCUUGUUGGGCGGCAGACCGAUUACGCCGGAAGCGGAAGUGGUAGGAGGUGGCGAG
((((........))))..(((.((((((((..((((((((((..........)))))))))).))))))...((.(((((.(((....)))..))))).))...)).))). ( -46.50)
>DroVir_CAF1 86582 87 - 1
GACCGAAAGACUGCUCUUUUGGCUGCCGCCGUGGCCAGCGAUUUGUACAGAUGGCUUUUGUUGGGCGACAGUCCA---------------------GCCGGCGG---CUCU
..((((((((....))))))))..(((((((.(((((.(..........).)))))...(((((((....)))))---------------------))))))))---)... ( -38.70)
>DroPse_CAF1 29175 96 - 1
GAUCGAAAAAUGGCCCGCUUGGCCGCUGCCGUGGCCAGGGUCUUGUACAGAUGACUCUUGUUCGGCGACAUGCCACUGAC------------AGAUGUCGGUGG---CGGA
...........((((.....))))(.(((((.(((.((((((..........)))))).)))))))).).((((((((((------------....))))))))---)).. ( -41.00)
>DroEre_CAF1 30276 108 - 1
GAGCGGAAGAUGGCUCUCUUGGCAGCCGCCGAGGCGAGGGUCUUGUACAGGUGACUCUUGUUGGGCGGCAGACCGAUUACGCCAGAGGCGGAAGUGGUUGGAGG---CGGG
((((........)))).((((.(.((((((..((((((((((..........)))))))))).)))))).(((((....((((...))))....)))))...).---)))) ( -47.50)
>DroYak_CAF1 24521 108 - 1
GAGCGGAAGAUGGCUCUUUUGGCAGCCGCCGAGGCGAGUGUCUUGUACAGGUGACUCUUGUUGGGCGGCAGACCGAUUACGCCGGAAGCGGAAGUGGUUGGCGG---CGGG
((((........))))........((((((..((((((.(((..........))).)))))).))))))...(((....((((((..((....))..)))))).---))). ( -48.40)
>DroAna_CAF1 27093 96 - 1
GAGCGGAAGAUGGCGCGCUUGGCCGCCGCCGAGGCCAGCGUCUUGUACAGCUGGCUCUUGUUGGGCGUAAGUCCG------------GCGAGGGAUGUUGGAGG---CGGA
(((((..........)))))..(((((.(((((((((((..........)))))))((((((((((....)))))------------))))).....)))).))---))). ( -48.50)
>consensus
GAGCGAAAGAUGGCUCUCUUGGCAGCCGCCGAGGCCAGCGUCUUGUACAGGUGACUCUUGUUGGGCGGCAGACCGAUUAC_______GCGGAAGUGGUUGGAGG___CGGG
((((........))))...((((.(.(((((((((....)))))..(((((.....)))))..)))).).).))).................................... (-13.38 = -14.55 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:51 2006