Locus 6269

Sequence ID 3R_DroMel_CAF1
Location 16,353,165 – 16,353,267
Length 102
Max. P 0.958070
window10225

overview

Window 5

Location 16,353,165 – 16,353,267
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 81.44
Mean single sequence MFE -31.58
Consensus MFE -19.55
Energy contribution -20.68
Covariance contribution 1.13
Combinations/Pair 1.17
Mean z-score -2.58
Structure conservation index 0.62
SVM decision value 1.48
SVM RNA-class probability 0.958070
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16353165 102 - 27905053
GGUGUCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUAAAACUGGUAGUGUAACGCGGUGAAACUGGGAGUAUAGCCCAGUGUAGCCCAGUGAAACAUA
.((.(((.....((((..(((((((...(((....((((.....))))...)))...))))))).((((((.......))))))...))))..))).))... ( -39.70)
>DroSec_CAF1 52910 92 - 1
GGUGCCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUGAAACUGGGAGUGUAACCCGGUGGAACUGGGAGUAUAGCC----------CAGUGAAACAUA
.((..((.....((((......(((...)))...((((((...((((((.......))))))...))))))......)))----------)..))..))... ( -32.70)
>DroSim_CAF1 61618 92 - 1
GGUGCCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUGAAACUGGGAGUGUAACCCGGUGGAACUGGGAGUAUAGCC----------CAGUGAAACAUA
.((..((.....((((......(((...)))...((((((...((((((.......))))))...))))))......)))----------)..))..))... ( -32.70)
>DroYak_CAF1 69990 80 - 1
GGUGCCAAAAAGGGGCAGUCGCCAUCCAGCGAAACCCAGAGAAACU------------CAGUGUAGCAGUGAGUAUAGCC----------CAGUGAAACAUA
((.((......(((....((((......))))..)))......(((------------((.((...)).)))))...)))----------)........... ( -21.20)
>consensus
GGUGCCAAAAUGGGGCAGUCACCGCCCAGCGAAACCCAGUGAAACUGGGAGUGUAACCCGGUGGAACUGGGAGUAUAGCC__________CAGUGAAACAUA
..((((.......)))).(((((((...)))...((((((...((((((.......))))))...)))))).....................))))...... (-19.55 = -20.68 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:15 2006