| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,314,659 – 2,314,751 |
| Length | 92 |
| Max. P | 0.563631 |
| Location | 2,314,659 – 2,314,751 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.46 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2314659 92 - 27905053 UCUUUCCUCUGCAAAUCAAAUUAGGCAUUU-AAAAGAUCUAUUCAAAUCCCAAAUGAUCCAUAAAAAUGGGAUUCUGUGCAGAUUUUCCAUAA .......((((((........(((((....-....).))))....(((((((...............)))))))...)))))).......... ( -14.36) >DroSec_CAF1 20451 92 - 1 UCUUUCCUCUGCGAAUCAAAUUAGGCAUUU-AAAAGAUCUAUUCAAAUCCCAAAUGAUCCAUAAAAAUGGGAUUCUGUGCAGAUUUUCCAUAA .......((((((((((......((.((((-....((.....)))))).)).......((((....)))))))))...))))).......... ( -14.50) >DroSim_CAF1 20605 92 - 1 UCUUUCCUCUGCAAAUCAAAUUAGGCAUUU-AAAAGAUCCAUUCAAAUCCCAAAUGAUCCAUAAAAAUGGGAUUCUGUGCAGAUUUUCCAUAA .......((((((..........((.(((.-....))))).....(((((((...............)))))))...)))))).......... ( -15.76) >DroEre_CAF1 25806 90 - 1 U--ACCCUCUGCAAAUCAAAUUAGGCAUUU-AAAAGAUGUAUUCAAAUCCCAAAUGAUCCAUAAAAAUGGGAUUCUGUGCAGAUUUUCCAUAA .--....((((((...........(((((.-....))))).....(((((((...............)))))))...)))))).......... ( -17.16) >DroYak_CAF1 19722 90 - 1 A--ACACUCUGCAAAUCAAAUUAGGCAUUU-AAAAGAUCUAUUCAAAUCCCAAAUGAUCCAUAAAAAUGGGAUUCUGUGCAGAUUUUCCAUAA .--....((((((........(((((....-....).))))....(((((((...............)))))))...)))))).......... ( -14.36) >DroAna_CAF1 22861 88 - 1 ---UUCCC--CCAAAUCAAAUUAGCCAUUUGAAAAGAUCUAUUCAAAUCCCAAAUGAUCCAUAAAUAUGGGAUUCUUUGCAAAUUUUCCAUAA ---.....--................(((((.(((((.........((((((.((.........)).))))))))))).)))))......... ( -10.90) >consensus U__UUCCUCUGCAAAUCAAAUUAGGCAUUU_AAAAGAUCUAUUCAAAUCCCAAAUGAUCCAUAAAAAUGGGAUUCUGUGCAGAUUUUCCAUAA .......((((((......................((.....)).(((((((...............)))))))...)))))).......... (-11.93 = -12.46 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:47 2006