Locus 6245

Sequence ID 3R_DroMel_CAF1
Location 16,296,364 – 16,296,484
Length 120
Max. P 0.808077
window10187

overview

Window 7

Location 16,296,364 – 16,296,484
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -27.00
Consensus MFE -23.27
Energy contribution -23.93
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.86
SVM decision value 0.64
SVM RNA-class probability 0.808077
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16296364 120 - 27905053
CCAAGUGACAACGCCGCCGGCGACAGCGUACAUUCGCGUUCACUUACAGAAAGCUGAGCAGCGAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGGAUAAAAUUCACAAAUAAAUGCGAA
....((((.....((((((((....))((...(((((((((((((.....))).))))).)))))...))....................)))))).......))))............. ( -30.60)
>DroSec_CAF1 17028 120 - 1
CCAAGUGACAACGCCGCCGGCGACAGCGCACAUUCGCUUUCACUUACAGAAAGCUGAGCAGCAAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGAAUAAAAUUCACAAAUAAAUGCAAA
....((((...((((...))))....(((.((((.((((((.......))))))......((......))..................)))))))........))))............. ( -23.30)
>DroSim_CAF1 9187 120 - 1
CCAAGUGACAACGCCGCCGGCGACAGCGCACAUUCGCUUUCACUUACAGAAAGCUGAGCAGCAAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGGAUAAAAUUCACAAAUAAAUGCGAA
....((((.....((((((((....))((.((((.((((((((((.....))).)))).)))..))))))....................)))))).......))))............. ( -27.10)
>consensus
CCAAGUGACAACGCCGCCGGCGACAGCGCACAUUCGCUUUCACUUACAGAAAGCUGAGCAGCAAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGGAUAAAAUUCACAAAUAAAUGCGAA
....((((.....((((((((((.((((......)))).)).....(((....))).)).((......))....................)))))).......))))............. (-23.27 = -23.93 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:35 2006