Locus 624

Sequence ID 3R_DroMel_CAF1
Location 2,298,964 – 2,299,073
Length 109
Max. P 0.551254
window994

overview

Window 4

Location 2,298,964 – 2,299,073
Length 109
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 87.72
Mean single sequence MFE -27.67
Consensus MFE -23.32
Energy contribution -23.21
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.84
SVM decision value 0.04
SVM RNA-class probability 0.551254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2298964 109 - 27905053
AAUUUCUUAU------AAAACCAGCUGAUGAUC-CCGACAGCGACUGUAUAAACAUAUUUGGCCCAUUCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGUGGAC
..........------....(((((((.((...-.)).))))...(((....)))....))).....((((((((((.((((....((((.....))))..)))))))))))))). ( -27.40)
>DroEre_CAF1 10434 115 - 1
AAUUUUUUAUACUUGUAAGA-CGGCUGAUGAUCCCUGACAGCGGCUGUAUAAACAUAUUUAGCCCAUCCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGUGGAC
.............(((...(-((((((.((........)).)))))))....))).............(((((((((.((((....((((.....))))..))))))))))))).. ( -29.60)
>DroYak_CAF1 4536 110 - 1
AAUUUUUUAC------AAGACCAGCUGAUGAUUCCUGGCAGGGGCUGUAUAAACAUAUUUAGCCAAUCCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGCGGAC
..........------..(.((((..((....)))))))...(((((.(((....))).)))))....((.((((((.((((....((((.....))))..)))))))))).)).. ( -26.00)
>consensus
AAUUUUUUAU______AAGACCAGCUGAUGAUCCCUGACAGCGGCUGUAUAAACAUAUUUAGCCCAUCCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGUGGAC
.......................(((((.........((((...))))..........))))).....(((((((((.((((....((((.....))))..))))))))))))).. (-23.32 = -23.21 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:46 2006