| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,198,145 – 16,198,377 |
| Length | 232 |
| Max. P | 0.853510 |
| Location | 16,198,145 – 16,198,265 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.64 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -21.74 |
| Energy contribution | -21.30 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16198145 120 + 27905053 CAUUAUUUGCAGUUACCUCGGCGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUCCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........((((((((((..((((.(((((......)))))))))..)))))))................................((((.......))))..............))).. ( -25.60) >DroSec_CAF1 27333 120 + 1 CAUUAUUUGCAGUUACCUCGGCGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........((((((((((..((((.(((((......)))))))))..)))))))................................((((.......))))..............))).. ( -25.60) >DroEre_CAF1 27533 120 + 1 CAUUAUUUGCAGUUAUCUCGGUGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........(((((.......((.(((((((.((((.(((....((.(((....))).....(((......))).......))....)))....)))).))))))).)).....))))).. ( -23.10) >DroYak_CAF1 29737 120 + 1 CAUUAUUUGCAGUUAUCUCGGUGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAACAUCUUUAAAAUGCCAUCAACAACAUAUUGUCA ........(((((.......((.(((((((.((((.(((....)))(((....))).....................................)))).))))))).)).....))))).. ( -20.30) >consensus CAUUAUUUGCAGUUACCUCGGCGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........((((((((((..((((.(((((......)))))))))..)))))))................................((((.......))))..............))).. (-21.74 = -21.30 + -0.44)
| Location | 16,198,265 – 16,198,377 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.83 |
| Mean single sequence MFE | -37.02 |
| Consensus MFE | -31.84 |
| Energy contribution | -31.90 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16198265 112 + 27905053 UGCGU--------GUGUGUCAGUGUGCGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAACUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA (((((--------.((((((.((((((.((....((....))(((((.((((((....))))))))))).)).)))))).)))))).((.(((...))).))...........))))).. ( -35.80) >DroSec_CAF1 27453 112 + 1 UGCGU--------GUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA ...((--------(((((((.((.(((((.(((.(((((.......((((((((....)))))))).....))).)).)))))))).)).)))....(((..........))))))))). ( -34.50) >DroEre_CAF1 27653 120 + 1 UGCCUGUGUGCCUGUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA (((((((((((((((((.(..((((((.((..((((....))....((((((((....))))))))))..)).))))))).)))))))))))).....)))))................. ( -43.30) >DroYak_CAF1 29857 112 + 1 UGCGU--------GUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA ...((--------(((((((.((.(((((.(((.(((((.......((((((((....)))))))).....))).)).)))))))).)).)))....(((..........))))))))). ( -34.50) >consensus UGCGU________GUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA .............((((((.(((.(((((.(((.(((((...(((((.((((((....)))))))))))..))).)).)))))))).((.(((...))).)).......))).)))))). (-31.84 = -31.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:35 2006