| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,286,542 – 2,286,662 |
| Length | 120 |
| Max. P | 0.707218 |
| Location | 2,286,542 – 2,286,662 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.10 |
| Mean single sequence MFE | -38.90 |
| Consensus MFE | -27.49 |
| Energy contribution | -28.27 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2286542 120 - 27905053 GUACAUUUUUUGUCUUUGCAUGUUCCGUUUGUUUUUAGAAGAGAGAUCGCGCUCGAGAGAUUCGGAAGAGCGUCGGCUGUGCAGCCGCUCUGCUGGCGUGGCCGAUGAUUUUACGAUGUU ..(((((....(((...((.(.(((((..(.((((.((..((....))...)).)))).)..))))).)))((((((..((((((......))).)))..))))))))).....))))). ( -38.40) >DroSec_CAF1 23044 105 - 1 AUACAU----UGUCUUUGCAUGUUCCGUUUCUUUUGAGGAGAGAGAUCUCGCGCGAGAGAGCCGGAAGAGCGUCGGUUGU-----------GCUGGCGUGGCCGAUGAUUUUGUGAUGUU .((((.----.(((...((.(.(((((.((((((((.(((((....)))).).)))))))).))))).)))((((((..(-----------(....))..)))))))))..))))..... ( -42.10) >DroSim_CAF1 23507 109 - 1 AUACAUUUUUUGUCUUUGCAUGUUCCGUUUCUUUUGAGGAGAGAGAUCGCGCGCGAGAGAGCCGGAAGAGCGUCGGUUGU-----------GCUGGCGUGGCCGAUGAUUUUGUGAUGUU ..(((((....(((...((.(.(((((.((((((((.((.((....)).).).)))))))).))))).)))((((((..(-----------(....))..))))))))).....))))). ( -36.20) >consensus AUACAUUUUUUGUCUUUGCAUGUUCCGUUUCUUUUGAGGAGAGAGAUCGCGCGCGAGAGAGCCGGAAGAGCGUCGGUUGU___________GCUGGCGUGGCCGAUGAUUUUGUGAUGUU ..(((((....(((((.((.(.(((((..(((((((....((....)).....)))))))..))))).)((((((((..............)))))))).)).)).))).....))))). (-27.49 = -28.27 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:34 2006