Locus 6151

Sequence ID 3R_DroMel_CAF1
Location 16,112,463 – 16,112,573
Length 110
Max. P 0.897995
window10026

overview

Window 6

Location 16,112,463 – 16,112,573
Length 110
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 93.84
Mean single sequence MFE -33.91
Consensus MFE -29.72
Energy contribution -29.76
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 1.00
SVM RNA-class probability 0.897995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16112463 110 - 27905053
GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCACACCACCAAUGCAGGCGC---------ACAC
..(((((((..((((......(((...(((..((..(((((.....))))).))..)))..))).......(((.....)))..............))))..))))---------))). ( -33.40)
>DroSec_CAF1 63152 108 - 1
GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACGC---------ACAC
..(((((((..((((......(((...(((..((..(((((.....))))).))..)))..))).......(((.....)))......--......))))..))))---------))). ( -33.10)
>DroSim_CAF1 69382 108 - 1
GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACAC---------ACAC
..(((((((..((((......(((...(((..((..(((((.....))))).))..)))..))).......(((.....)))......--......))))..))))---------))). ( -33.50)
>DroEre_CAF1 39607 117 - 1
GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACACAAUGCACACACAC
..(((((((.((.(..((((((((...(((..((..(((((.....))))).))..)))..))).(((....)))....)))))..).--))......(((.......)))))))))). ( -36.40)
>DroYak_CAF1 83342 112 - 1
GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUGAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACAC-----ACACACGC
(((((((((..((((......(((........((..(((((.....))))).)).......))).......(((.....)))......--......))))..))))-----))).)).. ( -33.16)
>consensus
GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA__CCACCAAUGCAGACAC_________ACAC
...(((((((.(((....)))(((...(((..((..(((((.....))))).))..)))..))).)))))))((....((((...............)))).))............... (-29.72 = -29.76 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:57 2006