Locus 613

Sequence ID 3R_DroMel_CAF1
Location 2,270,226 – 2,270,319
Length 93
Max. P 0.970009
window974

overview

Window 4

Location 2,270,226 – 2,270,319
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 84.95
Mean single sequence MFE -30.52
Consensus MFE -24.90
Energy contribution -25.06
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -2.29
Structure conservation index 0.82
SVM decision value 1.65
SVM RNA-class probability 0.970009
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2270226 93 - 27905053
UGAGUGCGAGCUGGAACUCGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGACAAACGCAGCAACCACUUCCGGCUCGAGUUCUGAAUC
.(((..(((((((((..((((.(((((((.(((......))).))).)))).)))).......((......)))))))))))..)))...... ( -33.80)
>DroSec_CAF1 6800 93 - 1
CGAGUGAGAGCUGGACCUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCUCUACCGGCUCGAAUUCUGAAUC
.((((..(((((((....((..(((((((.(((......))).))).))))...(.....).......))....)))))))..))))...... ( -28.70)
>DroSim_CAF1 6810 93 - 1
CGAGUGAGAGCUGGAACUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCCCUUCCGGCUCGAAUUCUGAAUC
.((((..(((((((((..((..(((((((.(((......))).))).))))...(.....).......))..)))))))))..))))...... ( -31.80)
>DroEre_CAF1 6855 93 - 1
UGAGUUAAGGUUGGAACUGGAUGAUGAGGAUCCGAUAUAGGAACCUCCAUCCUCGCCCAACACUUCAACCUCUUCCGGCUCAGAUUCCGAGUC
.(((((((((((((....(((((..((((.(((......))).)))))))))....))))).))).)).)))....(((((.......))))) ( -31.60)
>DroYak_CAF1 6476 93 - 1
CGAGUUAAAGCUGGAACUUGACGAUGAGGAUCCAUUAUGGGAACCUCUAUCUUCGCACAACACGUCAACCUUUUUCGGCUCAGAUUCCGAAUC
.(((((..((((((((.((((((((((((.(((......))).)))).)))...(.....)..)))))....))))))))..)))))...... ( -26.70)
>consensus
CGAGUGAGAGCUGGAACUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCUCUUCCGGCUCGAAUUCUGAAUC
.((((..(((((((((...((.(((((((.(((......))).)))).))).))(.....)...........)))))))))..))))...... (-24.90 = -25.06 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006