Locus 6114

Sequence ID 3R_DroMel_CAF1
Location 16,033,835 – 16,033,933
Length 98
Max. P 0.544640
window9966

overview

Window 6

Location 16,033,835 – 16,033,933
Length 98
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 80.48
Mean single sequence MFE -16.33
Consensus MFE -14.15
Energy contribution -14.27
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -0.89
Structure conservation index 0.87
SVM decision value 0.02
SVM RNA-class probability 0.544640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16033835 98 - 27905053
----AUUAGCACAUUAAAUUACUUUUCAUUUUUAACUUGUACUGUUCACAAUCUUUUUGGUCUAAUGUGCACAUAUUCCGAUUUUUUGAAUAGCACUAAAGC
----....((((((((.((((............(((.......)))...........)))).))))))))...(((((.........))))).......... ( -10.80)
>DroSec_CAF1 50307 86 - 1
------UAGCACAUCG----------CAUUUUUAAUUGGUACUGUUCACAAUCCUUUUGGUAUGGUGUGCACAUAUUCCGAUUUUUUGAAUAGCACCAAUGC
------..((.....)----------).......((((((.(((((((.((.....((((....(((....)))...))))..)).))))))).)))))).. ( -19.80)
>DroSim_CAF1 33709 92 - 1
AGCGAAUAGCACAUUG----------AAUUUUUAACUGGUACUGUUCACAAUCCUUUUGGUCUGGUGUGCACAUAUUCCGAUUUUUUGAAUAGAACCAAUGC
.((.....))......----------..........((((.(((((((.((.....((((....(((....)))...))))..)).))))))).)))).... ( -18.40)
>consensus
____A_UAGCACAUUG__________CAUUUUUAACUGGUACUGUUCACAAUCCUUUUGGUCUGGUGUGCACAUAUUCCGAUUUUUUGAAUAGCACCAAUGC
....................................((((.(((((((.((.....((((....(((....)))...))))..)).))))))).)))).... (-14.15 = -14.27 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:59 2006