Locus 6113

Sequence ID 3R_DroMel_CAF1
Location 16,027,383 – 16,027,488
Length 105
Max. P 0.895524
window9965

overview

Window 5

Location 16,027,383 – 16,027,488
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 89.33
Mean single sequence MFE -20.62
Consensus MFE -14.96
Energy contribution -17.20
Covariance contribution 2.24
Combinations/Pair 1.04
Mean z-score -2.51
Structure conservation index 0.73
SVM decision value 0.99
SVM RNA-class probability 0.895524
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16027383 105 - 27905053
AGAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAACAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAAAGGGAUAAUCUAGCUCCAUUGGAUAGUCUUGAA
.(((((.((((((..(((.......)))..))))))......)))))((((((((......))))))))....(((((.((((((.....)))))).)))))... ( -20.10)
>DroSec_CAF1 43973 104 - 1
-AAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAAAGGGAUUAUCUACUUCCAUUGGAUAGUCUUGAA
-......((((((..(((.......)))..))))))........(((((((((((......))))))))....(((((((((((.......)))))))))))))) ( -22.30)
>DroSim_CAF1 27303 104 - 1
-AAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAACGGGAUUAUCUACUUCCAUUGGAUAGUCUUGAA
-......((((((..(((.......)))..))))))...........((((((((......))))))))...((((((((((((.......)))))))))))).. ( -24.70)
>DroEre_CAF1 28216 100 - 1
-AAAAUCUCGGCUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCUAUAAAUAUGAACAAAAGGGAUUAC----GCCCAUUGAAUAGUCUUCAA
-......((((((..(((.......)))..))))))...........((((((..........))))))....(((.....----.))).(((((.....))))) ( -17.70)
>DroYak_CAF1 35533 99 - 1
-AAAAUCUCCUUUACAUUCGAAUAAAAUAAAGCCGAAUAAUGGUUUCGUUCAUUUCUAUAAAUAUGAACAAAAGGGAUUAU----U-CCAUUGGAUAGUCUUAAA
-.......(((((................((((((.....)))))).((((((..........)))))).)))))((((((----(-(....))))))))..... ( -18.30)
>consensus
_AAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAAAGGGAUUAUCUA_UUCCAUUGGAUAGUCUUGAA
.......((((((..(((.......)))..))))))...........((((((((......))))))))....(((((((((((.......)))))))))))... (-14.96 = -17.20 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:58 2006