| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,263,581 – 2,263,676 |
| Length | 95 |
| Max. P | 0.545512 |
| Location | 2,263,581 – 2,263,676 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.62 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -21.10 |
| Energy contribution | -20.63 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2263581 95 - 27905053 -A-----------ACAAUGUAA---AU-CAACUCACCAAUGCAACGAUACUGUCGACGGCCUUGUUGAAGCGAUCGACCAGACCGGUCAUAGUCUUAUAGCAGGCAGUGUC -.-----------.........---..-.................((((((((((((((.((.(((((.....))))).)).)).)))...((......)).))))))))) ( -23.10) >DroVir_CAF1 364 91 - 1 -------------GAUA----A---AUGGUACUUACCAAUGCAACAAUACUGUCGACAGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC -------------....----.---.((((....))))........(((((((((((((.((((((((.....))))))))..)))))...((......)).)))))))). ( -25.70) >DroPse_CAF1 26508 92 - 1 -G-----------GCCACGGG-------AUACUUACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC -.-----------(((..((.-------.......))..(((......(((((.(((((.((((((((.....))))))))..))))))))))......))))))...... ( -26.10) >DroGri_CAF1 205 107 - 1 GGAGUCAAUGGAGGAGAUUUUA---AU-UUACUUACCAAUGCAACAAUACUGUCGACAGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAACAGGCAGUGUC (..(.((.((((((((((....---))-)).))).))).)))..).(((((((((((((.((((((((.....))))))))..)))))...((......)).)))))))). ( -27.30) >DroAna_CAF1 205 98 - 1 -A-----------AGGAUUGAAAGGAU-AAACUCACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAACGAUCGACCAGACCGGUCAUAGUCUUAUAGCAGGCAGUGUC -.-----------.(.((((..((...-...))...)))).)....(((((((((((((.((.(((((.....))))).)).)).)))...((......)).)))))))). ( -23.40) >DroPer_CAF1 26440 92 - 1 -G-----------GCCACGGG-------AUACUUACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC -.-----------(((..((.-------.......))..(((......(((((.(((((.((((((((.....))))))))..))))))))))......))))))...... ( -26.10) >consensus _G___________GCCAUGGAA___AU_AUACUUACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC ..............................................(((((((((((((.((((((((.....)))))))).)).)))...((......)).)))))))). (-21.10 = -20.63 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:21 2006