Locus 6099

Sequence ID 3R_DroMel_CAF1
Location 15,994,998 – 15,995,097
Length 99
Max. P 0.887625
window9945

overview

Window 5

Location 15,994,998 – 15,995,097
Length 99
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 65.88
Mean single sequence MFE -28.75
Consensus MFE -17.12
Energy contribution -18.25
Covariance contribution 1.12
Combinations/Pair 1.13
Mean z-score -1.42
Structure conservation index 0.60
SVM decision value 0.95
SVM RNA-class probability 0.887625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15994998 99 - 27905053
AUUUUAGGUUAGGCUAAUGCCGCUGCCGCUGCC---------------GCUUCUGUCGACGUCGACGUCAGCGGGCAGAUAUAGAUUUGCCCGAUGCCAAAAUCGCCCGAAAUA
((((..(((..(((....)))((((.(((....---------------))....((((....))))).))))((((((((....))))))))(((......))))))..)))). ( -35.40)
>DroSim_CAF1 89086 99 - 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNACGUCGACGUCAGCGGGCAGAUAUAGAUUUGCCCGAUGCCAAAAUCGCCCGAAAUA
.................................---------------..........(((....)))..((((((((((....))))))))(((......)))))........ ( -15.90)
>DroYak_CAF1 120739 99 - 1
AUUUUAGGUUAGGCUAAUGCCGCUGCUGCUGCU---------------ACCUCUGUCGACGUCGACGUCAACGGGCAGAUAUAGACUUGCCCGAUGCCAAAAUCGCCCGAAAUA
((((..(((..(((....)))((.((....)).---------------.........((((....))))..(((((((........)))))))..)).......)))..)))). ( -28.70)
>DroAna_CAF1 79721 114 - 1
UUUUUAGGUUAGGCUAAUGCCUCUGCCGCUGCCACUGCCAGCGUCGUCGUCGUCGUCGACUUCAACGUCAGCGGGCAGAUAUAGAUUCGUUCGAUGCCAAAAUCGCCCAAAAUA
......(((.((((....))))..))).(((((...((..((((.(..((((....))))..).))))..)).)))))..........(..((((......))))..)...... ( -35.00)
>consensus
AUUUUAGGUUAGGCUAAUGCCGCUGCCGCUGCC_______________GCCUCUGUCGACGUCGACGUCAGCGGGCAGAUAUAGAUUUGCCCGAUGCCAAAAUCGCCCGAAAUA
......(((..(((....)))...)))..............................((((....)))).((((((((((....))))))))(((......)))))........ (-17.12 = -18.25 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:38 2006