Locus 6093

Sequence ID 3R_DroMel_CAF1
Location 15,981,466 – 15,981,556
Length 90
Max. P 0.606315
window9938

overview

Window 8

Location 15,981,466 – 15,981,556
Length 90
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 82.10
Mean single sequence MFE -24.06
Consensus MFE -14.91
Energy contribution -14.19
Covariance contribution -0.72
Combinations/Pair 1.30
Mean z-score -1.84
Structure conservation index 0.62
SVM decision value 0.15
SVM RNA-class probability 0.606315
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15981466 90 - 27905053
UAUAACG------CUGUGUGGGCUUGUGUUUA--GAGCAGAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACAAAUCGAAAAGGACGC
.......------.(((.((.((((((((((.--..((.((((((....))))))..))...))--------)))))))).)).)))................... ( -24.00)
>DroSim_CAF1 84743 96 - 1
UAUAACUCUGAAACUGUGUGGGCUUGUGUUUA--GAGCAGAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACAAAUCGAAAAGGACGC
..............(((.((.((((((((((.--..((.((((((....))))))..))...))--------)))))))).)).)))................... ( -24.00)
>DroEre_CAF1 82523 96 - 1
UAUAGCUCUGAUCUUGCGUGGGCUUGUGUUUA--GAGCAUAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACGAAUCGAAAAGGACGC
....(..((..((((((.((.((((((((((.--..((..(((((....)))))...))...))--------)))))))).)).)))).......))..))..).. ( -25.81)
>DroYak_CAF1 113433 96 - 1
UAUAACUCUGAUCUUGUGUGGGCUUGUGUUUA--GAGCACAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACAAAUCAAAAAGGACGC
........((((.((((.((.((((((((((.--..((..(((((....)))))...))...))--------)))))))).)).))))....)))).......... ( -23.80)
>DroAna_CAF1 75482 106 - 1
UAUAAUUCUGAACGUGUUUGUUUGUCUGUUUGGGGAACACAGUGUAUAAAUAUUUGGGUGGAAAAUCAACUAACACGAGGCCAAACAAACAGUUCGAAAAGAACGG
.....(((.((((.(((((((((((((...(((....).))((((.....((.(((..(....)..))).)))))).))).)))))))))))))))))........ ( -22.70)
>consensus
UAUAACUCUGAACCUGUGUGGGCUUGUGUUUA__GAGCACAGUGUAUAAAUAUUUGGGUGGAAA________ACACAAGUGCAGGCAAACAAAUCGAAAAGGACGC
..............(((.((.((((((((.......((..(((((....)))))...)).............)))))))).)).)))................... (-14.91 = -14.19 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:31 2006