| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,966,775 – 15,966,883 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 15,966,775 – 15,966,883 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 92.59 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -22.81 |
| Energy contribution | -23.03 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15966775 108 - 27905053 GGGUGAGCCAAAGUAGCUCAGAAGGGCAUUGGGGUGGACCAGUGUAGUUAAGAAAUUUUAAAUAGCAAACAAUUAACCAUAAAUUAGGUUCAUCUGAUGGUUGAAUCA .(((.(((((.....((((....))))..(.(((((((((..(((.(((((.....................))))).))).....))))))))).))))))..))). ( -24.80) >DroSec_CAF1 93083 108 - 1 GGGUGGGCCAAAGUAACUCAGAAGAGCAUUGGGGUGGACCAGUGUAGCUCAGAAAUUUUAAAUAGGAAACAUUUAACGAUAAAUUAGAAUCAUCUGAUGGUCGAAUCA .(((.(((((...............(((((((......)))))))...(((((....((((((.(....))))))).(((........))).))))))))))..))). ( -26.90) >DroSim_CAF1 68937 108 - 1 GGGUGAGCCAAAGUAGCUCAGAAGGGCAUUGGGGUGGACCAGUGUAGCUCAGAAAUUUUAAAUAGCAAACAUUUAACCAUAAAUUAGGUUCAUCUGAUGGUUAAAUCA ((((((((((((((..((.((....(((((((......)))))))..)).))..)))))...........(((((....)))))..)))))))))(((......))). ( -27.00) >consensus GGGUGAGCCAAAGUAGCUCAGAAGGGCAUUGGGGUGGACCAGUGUAGCUCAGAAAUUUUAAAUAGCAAACAUUUAACCAUAAAUUAGGUUCAUCUGAUGGUUGAAUCA ((((((((((((((..((.((....(((((((......)))))))..)).))..))))).....(....)................)))))))))(((......))). (-22.81 = -23.03 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:18 2006