| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,255,858 – 2,255,975 |
| Length | 117 |
| Max. P | 0.692223 |
| Location | 2,255,858 – 2,255,975 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -20.79 |
| Consensus MFE | -12.90 |
| Energy contribution | -14.25 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2255858 117 + 27905053 ACCUUUUGAAAAUUGCGGCAGGUGCAUUUUUUCCGCUUUUAUUUCGC-CAAAGCGGCAUUCAGCUAGUGCAUUUUCUUUCCACAUUUUCCACUGCCUUUUCUUUCUUC--CUUCUCCGCC .......(((((....((((((((((((....(((((((........-.))))))).........)))))))...................)))))))))).......--.......... ( -19.42) >DroSec_CAF1 46896 117 + 1 ACCUUUUGAAAAUUGCGGCAGGUGCAUUUUUUCCGCUUUUAUUUCGC-CAAAGCGGCAUUCAGCGAGUGCAUUUUCUUUCCAUGUUUUCCACUGCCUUUUCUUUCUGC--CUCCUCCGCC ..............((((.(((.(((.......((((((........-.))))))((((((...))))))...................................)))--..))))))). ( -24.70) >DroSim_CAF1 45051 104 + 1 ACCUUUUGAAAAUUGCGGCAGGUGCAUUUUUUCCGCUUUUAUUUCGC-CAAAGCGGCAUUCAGCGAGUGCAUUUUCUUUCCAUGUUUUCCACUGCCUU---------------CUCCGCC ..............((((.(((.(((.......((((((........-.))))))((((((...))))))......................)))..)---------------)))))). ( -22.00) >DroEre_CAF1 45258 109 + 1 ACCUUUUGAAAAUUGCGGCAGGUGCACUUUUUCCGCUUUUAUUUCGC-AAAAGCGGCAUUCAGCGAGUGCAUUUUCUUUCCAUGUUUUCCACUUCCUUCCCUCUUU----------CUCC .......((((((((.((.((((((((((....(((((((.......-)))))))((.....)))))))))))).))...)).)))))).................----------.... ( -22.40) >DroYak_CAF1 41668 120 + 1 ACCUUUUGAAAAUUGCGGCAGGUGCACUUUUUCCGCUUUUAUUUCGCCAAAAGCUGCAUUCAGCGAGUGCAUUUUCUUUCCAUGUUUUCCACUGCCUUUUCUUUUUUCGCUGCCGCCGCC ..............(((((((((((((((.....((((((........)))))).((.....))))))))))...........((........))..............))))))).... ( -28.20) >DroAna_CAF1 40549 89 + 1 ACCUUUUGAAAAUUGCGGCAGGUGCAAUUUUU----UUUCAUUUUUC-CAUCG-----------UAGUGCAUUUUCUUUCCACUCUUUCCAUUCCCCCACC--------------CCAC- .......((((((((((.....))))))))))----...........-....(-----------.((((...........)))))................--------------....- ( -8.00) >consensus ACCUUUUGAAAAUUGCGGCAGGUGCAUUUUUUCCGCUUUUAUUUCGC_CAAAGCGGCAUUCAGCGAGUGCAUUUUCUUUCCAUGUUUUCCACUGCCUUUUCUUU_U_______CUCCGCC .......((((((((.((.((((((((((...(((((((..........)))))))........)))))))))).))...)).))))))............................... (-12.90 = -14.25 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:15 2006