Locus 6055

Sequence ID 3R_DroMel_CAF1
Location 15,922,929 – 15,923,045
Length 116
Max. P 0.666726
window9878

overview

Window 8

Location 15,922,929 – 15,923,045
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.16
Mean single sequence MFE -16.37
Consensus MFE -14.85
Energy contribution -14.76
Covariance contribution -0.08
Combinations/Pair 1.14
Mean z-score -1.14
Structure conservation index 0.91
SVM decision value 0.28
SVM RNA-class probability 0.666726
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15922929 116 + 27905053
CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCU-U--UGGCCGACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU
(((((((((...........))((((((((...(((((..-.--.))))).........-....))))))))....................................)))))))..... ( -17.59)
>DroSec_CAF1 40503 117 + 1
CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCGACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU
(((((((((...........))((((((((...(((((....--.))))).........-....))))))))....................................)))))))..... ( -17.59)
>DroSim_CAF1 30387 117 + 1
CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCAACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU
(((((((((...........))((((((((....((((....--.))))((....))..-....))))))))....................................)))))))..... ( -15.10)
>DroEre_CAF1 29692 117 + 1
CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCGACAUAUUAA-AAACGUUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU
(((((((((...........))......(((..(((((....--.))))).....((((-((.....))))))...........))).....................)))))))..... ( -16.50)
>DroYak_CAF1 39987 117 + 1
CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCGACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU
(((((((((...........))((((((((...(((((....--.))))).........-....))))))))....................................)))))))..... ( -17.59)
>DroAna_CAF1 24580 120 + 1
UUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUUCGGCCUUUUGCCGGUCAACAUAUUAAAAAACGCUUUUUGAAAUUUCCACUCGACCAAACCAAUUAAAAACAUAAAUUUUCAGCGCCU
(((((((........((((((((...........)).))))))..((((......(((((((....)))))))...........))))....................)))))))..... ( -13.83)
>consensus
CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU__UGGCCGACAUAUUAA_AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU
(((((((((...........))((((((((...(((((.......)))))..............))))))))....................................)))))))..... (-14.85 = -14.76 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:31 2006