Locus 603

Sequence ID 3R_DroMel_CAF1
Location 2,237,810 – 2,237,909
Length 99
Max. P 0.664387
window956

overview

Window 6

Location 2,237,810 – 2,237,909
Length 99
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -18.13
Consensus MFE -14.25
Energy contribution -15.37
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.79
SVM decision value 0.28
SVM RNA-class probability 0.664387
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2237810 99 + 27905053
CUUAAAUCUUUUCCUUUUUUCCUUCCUACGGCUCCAUCGGCCACACCUUGUGCAUUUGCAGGAUGCGAACAGCGU----AUUGCUUUUUGUUUUCCGC-----CUUUG
.............................((((.....))))........(((....)))(((.(((((.(((..----...))).)))))..)))..-----..... ( -17.80)
>DroEre_CAF1 27087 90 + 1
CUUAAUUCUU-UCCUUUUUC--------UGGCUCCCUCGACCACACCUAGUGCUUUUGCAGGAUGCAAACAGCGU----AUUGCUUUUUGUUUUCUGC-----CUUUG
..........-.........--------(((.((....)))))..............((((((.(((((.(((..----...))).))))).))))))-----..... ( -16.80)
>DroYak_CAF1 25819 100 + 1
CUUAAUUCUUUUCCUUUUUC--------UGGCUCCCUCGGCCACACCUAGUGCUUUUGCAGGAUGCAAACAACGUAUGUAUUACUUUUUGUUUUCUGCUGCUACUUUG
....................--------(((((.....))))).....(((((....((((((.(((((.((.(((.....)))))))))).)))))).)).)))... ( -19.80)
>consensus
CUUAAUUCUUUUCCUUUUUC________UGGCUCCCUCGGCCACACCUAGUGCUUUUGCAGGAUGCAAACAGCGU____AUUGCUUUUUGUUUUCUGC_____CUUUG
.............................((((.....))))...............((((((.(((((.((((.......)))).))))).)))))).......... (-14.25 = -15.37 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:08 2006