Locus 6021

Sequence ID 3R_DroMel_CAF1
Location 15,856,538 – 15,856,652
Length 114
Max. P 0.801180
window9823

overview

Window 3

Location 15,856,538 – 15,856,652
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.49
Mean single sequence MFE -38.88
Consensus MFE -26.49
Energy contribution -27.52
Covariance contribution 1.03
Combinations/Pair 1.24
Mean z-score -1.42
Structure conservation index 0.68
SVM decision value 0.62
SVM RNA-class probability 0.801180
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15856538 114 + 27905053
CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGGCGGCGUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA
..(((....))).....((.((((((.((..(((((....(((((.((.((((((...)))))))).))))).((((((((.....))))))))..))))).)))))))))).. ( -44.20)
>DroVir_CAF1 107486 96 + 1
CGG---------CCUCAG-CCUCUU--------CAUCAUCACCCGCUCCCAGCUGCGUGUCCAUAUCCGUAGACAGCAUGUCCGCAAUAUGCUGAUGCGAUCUCUGGCAAGUCA
.((---------(....(-((....--------.......((.(((........))).)).......((((..((((((((.....)))))))).))))......)))..))). ( -23.40)
>DroSec_CAF1 19196 114 + 1
CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGGCGGCAUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA
..(((....))).....((........))...........(((((((((((((((((((((((((....)).))))))..........)))))))))...))))))))...... ( -43.10)
>DroSim_CAF1 22516 114 + 1
CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGCCGGCAUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA
..(((....))).....((.((((((.((..(((((....(((...)))((((((((((((((((....)).))))))..........))))))))))))).)))))))))).. ( -42.00)
>DroEre_CAF1 19527 114 + 1
CCACCGAAAGGUCCUCCGAGCUGUUCAGCAACUCUCCUUCGCCGGCGGCAUUGGCGUUGCUAGCCUCCCGCACCAACAUGUCCAUAAUGUGUUGAUGGGAUCGCUGGCAGGUCA
..(((....))).....((.((((.((((...........((..(((((......)))))..)).(((((...((((((((.....)))))))).)))))..)))))))).)). ( -41.30)
>DroYak_CAF1 30324 114 + 1
CCACCGAAAGGUCCUCCGAGUUGUUCAGCAAUUCUCCUUCGCCGGCGGCAUUGGCGUUGCUAGCCUCCCGGACCAGCAUGUCCAUUAUGUGUUGAUGAGAUCGCUGGCAGGUCA
..(((....))).....((.((((.((((...((((.....((((.(((..((((...)))))))..))))..((((((((.....))))))))..))))..)))))))).)). ( -39.30)
>consensus
CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGGCGGCAUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA
..(((....)))............................(((((((((..((((...)))))))(((((...((((((((.....)))))))).)))))..))))))...... (-26.49 = -27.52 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:37 2006