Locus 6011

Sequence ID 3R_DroMel_CAF1
Location 15,834,894 – 15,835,014
Length 120
Max. P 0.989540
window9810 window9811

overview

Window 0

Location 15,834,894 – 15,835,014
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -44.00
Consensus MFE -40.72
Energy contribution -41.17
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.93
SVM decision value 0.77
SVM RNA-class probability 0.846205
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15834894 120 + 27905053
GCACUUCACCACUGGCUCCAUCGACGAGCGGGAAUACCUGAUUGCGGAGCGCUUUGCCACUCUGUACGGUAUUGUGGUCUACCGUACAGCGGCCAAUCUGCUGGAGCCAGUUUGUUCAAC
..........(((((((((.(((.(((.((((....)))).))))))((((..(((((...((((((((((........)))))))))).)).)))..)))))))))))))......... ( -49.00)
>DroEre_CAF1 59635 120 + 1
ACACUUCACCACAGGCUCCAUCGACGAACGGGAGUACCUGAUUGCGGAGCGCUUUGCCACUCUGUACGGUAUCGUGGUCUACCGUACUGCGGCUAAUCUUCUGGAGCCUGUUUGCUCCAC
..........(((((((((((((.(((.((((....)))).))))))........(((.(...((((((((........)))))))).).)))........))))))))))......... ( -43.10)
>DroYak_CAF1 64188 120 + 1
ACACUUCACCACUGGCUCCAUCGACGAGCGGGAGUACCUGAUUGCAGAGCGCUUUGCCACUCUGUACGGUAUUGUGGUCUACCGUACUGCGGCCAAUCUGCUAGAGCCGGUUUGUUCUAC
..........((((((((..((..(((.((((....)))).)))..))(((..(((((.(...((((((((........)))))))).).)).)))..)))..))))))))......... ( -39.90)
>consensus
ACACUUCACCACUGGCUCCAUCGACGAGCGGGAGUACCUGAUUGCGGAGCGCUUUGCCACUCUGUACGGUAUUGUGGUCUACCGUACUGCGGCCAAUCUGCUGGAGCCAGUUUGUUCAAC
..........(((((((((.(((.(((.((((....)))).))))))((((..(((((.(...((((((((........)))))))).).))).))..)))))))))))))......... (-40.72 = -41.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 15,834,894 – 15,835,014
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -47.27
Consensus MFE -46.48
Energy contribution -45.93
Covariance contribution -0.55
Combinations/Pair 1.11
Mean z-score -2.58
Structure conservation index 0.98
SVM decision value 2.17
SVM RNA-class probability 0.989540
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15834894 120 - 27905053
GUUGAACAAACUGGCUCCAGCAGAUUGGCCGCUGUACGGUAGACCACAAUACCGUACAGAGUGGCAAAGCGCUCCGCAAUCAGGUAUUCCCGCUCGUCGAUGGAGCCAGUGGUGAAGUGC
......((.((((((((((...(((.(((.(((((((((((........)))))))))(((((......))))).)).....((.....))))).)))..))))))))))..))...... ( -49.30)
>DroEre_CAF1 59635 120 - 1
GUGGAGCAAACAGGCUCCAGAAGAUUAGCCGCAGUACGGUAGACCACGAUACCGUACAGAGUGGCAAAGCGCUCCGCAAUCAGGUACUCCCGUUCGUCGAUGGAGCCUGUGGUGAAGUGU
.((((((......))))))........(((((.((((((((........))))))))...)))))...(((((.(((...((((..((((((.....))..))))))))..))).))))) ( -48.60)
>DroYak_CAF1 64188 120 - 1
GUAGAACAAACCGGCUCUAGCAGAUUGGCCGCAGUACGGUAGACCACAAUACCGUACAGAGUGGCAAAGCGCUCUGCAAUCAGGUACUCCCGCUCGUCGAUGGAGCCAGUGGUGAAGUGU
.....(((.((((((((((...(((.(((.((.((((((((........))))))))((((((......)))))))).....((.....))))).)))..)))))))...)))....))) ( -43.90)
>consensus
GUAGAACAAACAGGCUCCAGCAGAUUGGCCGCAGUACGGUAGACCACAAUACCGUACAGAGUGGCAAAGCGCUCCGCAAUCAGGUACUCCCGCUCGUCGAUGGAGCCAGUGGUGAAGUGU
......((.((((((((((...(((.(((.((.((((((((........)))))))).(((((......))))).)).....((.....))))).)))..))))))))))..))...... (-46.48 = -45.93 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:25 2006