| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,805,742 – 15,805,834 |
| Length | 92 |
| Max. P | 0.986420 |
| Location | 15,805,742 – 15,805,834 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.71 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -18.17 |
| Energy contribution | -18.20 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.986420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15805742 92 + 27905053 -AAAAGCAGCAAAAGCGAAAGCUUAAAUUAGUCAAGCGCAAAAUCAAGGCGCUGACUCU------------------------UAAUGUUGAUAUAUUAACUUGUUACC-AUCACUUU -.....(((((.((((....)))).....(((((.((((.........)))))))))..------------------------...)))))..................-........ ( -22.20) >DroGri_CAF1 54812 106 + 1 AAGAAACAGCCAAAGCGAAAGUUUAAAUUACUCAAGCGGAAAAUCAAGGCGCUGACUUU--GG------CCUGU----GGGCGUUCGGUUGAUAUAUUAAGUUGUUGCGUAUCGCUCA ..((((((((..((((....)))).......((((.((((...(((((((.(.......--))------))).)----))...)))).))))........))))))(((...))))). ( -26.40) >DroSim_CAF1 31470 92 + 1 -AAAAGCAGCAAAAGCGAAAGCUUAAAUUAGUCAAGCGCAAAAUCAAGGCGCUGACUCU------------------------UAAUGUUGAUAUAUUAACUUGUUACC-AUCGCUUU -.(((((.....((((....)))).....(((((.((((.........)))))))))..------------------------..(((.(((((........))))).)-)).))))) ( -23.90) >DroEre_CAF1 30872 95 + 1 -AAAAGCAGUAAAAGCGAAAGCUUAAAUUAGUCAAGCGCAAAAUCAAGACGCUGACUCUUUGG-------------CGCGGCGUAAUGUUGAUAUAUUAACUUGUUACU--------- -....((.((..((((....)))).((..(((((.((((........).))))))))..))..-------------.)).))((((((((((....)))))..))))).--------- ( -22.30) >DroYak_CAF1 54835 95 + 1 -AAAAGCAGCAACAGCGAAAGCUUAAAUUAGUUAAGCGCAAAAUCAAGGCGCUGACUCUUUGG-------------CGCGGCGUAAUGCUGAUAUAUUAACUUGUUACU--------- -...((.(((((.(((....)))...((((((...((((.........((((..(....)..)-------------))).))))...))))))........))))).))--------- ( -24.40) >DroAna_CAF1 45840 111 + 1 -----GCAACAAAAGCGAAAGCC-AAAUUAGUCUAGCGCAAAAUCAAGGCGCUGACUUUUAGGUUUUGGCCUCCAGUACGGCGUAAUGUUGAUAUAUUAACUUGUUACC-AACGCUCU -----........((((((((((-.((..((((.(((((.........))))))))).)).)))))).(((........)))((((((((((....)))))..))))).-..)))).. ( -29.50) >consensus _AAAAGCAGCAAAAGCGAAAGCUUAAAUUAGUCAAGCGCAAAAUCAAGGCGCUGACUCU__GG_______________CGGCGUAAUGUUGAUAUAUUAACUUGUUACC_AUCGCU_U ......(((((.((((....)))).....((((.(((((.........))))))))).............................)))))........................... (-18.17 = -18.20 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:18 2006