Locus 600

Sequence ID 3R_DroMel_CAF1
Location 2,228,077 – 2,228,174
Length 97
Max. P 0.940603
window953

overview

Window 3

Location 2,228,077 – 2,228,174
Length 97
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 82.39
Mean single sequence MFE -22.64
Consensus MFE -16.07
Energy contribution -15.82
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -2.24
Structure conservation index 0.71
SVM decision value 1.29
SVM RNA-class probability 0.940603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2228077 97 - 27905053
GUUAUUCAUCAAAUUCUUCUGAUUUGGUGCCAUAUACCUAACACUUAGGUAGCAAAUCUUCUCGGAAACGAUUAGAUACACUUAAA--AAGAUUUCGAU--
......(((((((((.....))))))))).....((((((.....))))))....((((..(((....)))..)))).........--...........-- ( -20.80)
>DroSec_CAF1 17329 99 - 1
GUUAUUCAUCAAAUUCCAGUGAUUUGGUGCACUAUACCUAACGAUUAGGUAGCAAAUCUUCUCGGAAACGAUUAG-UACACUUAAA-AAAGAUUUCGCUGU
................((((((...((((.((((((((((.....))))))..........(((....))).)))-).))))....-.......)))))). ( -22.44)
>DroSim_CAF1 17603 100 - 1
GUUAUUCAUCAAAUUCCAGUGAUUUGGUGCAAUAUACCUAACGCUUAGGUAGCAAAUCUUCUCGGAAACGAUUAG-UACACUUAAAAAAAGAUUUCGCUGU
..(((((((((((((.....))))))))).))))((((((.....))))))(((((((((.(((....)))..((-....))......))))))).))... ( -23.10)
>DroEre_CAF1 17299 94 - 1
-----UCAUCAAAUUCCAGUGAUUUGGAGCAAUAUACCUGCAACUUAGGUGGCAAUACUUCUCGGAAACGAGUCGUCCCACUUGAA-AAAG-AUUCAUUUU
-----..(((....(((((....)))))(((.......)))...((((((((....((..((((....))))..)).)))))))).-...)-))....... ( -24.20)
>consensus
GUUAUUCAUCAAAUUCCAGUGAUUUGGUGCAAUAUACCUAACACUUAGGUAGCAAAUCUUCUCGGAAACGAUUAG_UACACUUAAA_AAAGAUUUCGCUGU
......(((((((((.....))))))))).....((((((.....))))))(.(((((((.(((....))).................))))))))..... (-16.07 = -15.82 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:05 2006