Locus 60

Sequence ID 3R_DroMel_CAF1
Location 353,506 – 353,597
Length 91
Max. P 0.543760
window98

overview

Window 8

Location 353,506 – 353,597
Length 91
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 85.19
Mean single sequence MFE -21.27
Consensus MFE -15.35
Energy contribution -15.60
Covariance contribution 0.25
Combinations/Pair 1.18
Mean z-score -1.46
Structure conservation index 0.72
SVM decision value 0.02
SVM RNA-class probability 0.543760
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 353506 91 - 27905053
CAAGGCCAGCUGUCGGAUAUUUAUUAUUGGAAAUGAAUAAACAUCUGGAGCUUGCCAGCUGUCGCUGAAAAACAGCCAAAAACCUUUUCUC--------
...(((.((((.((((((.((((((..(....)..)))))).)))))))))).))).(((((.........)))))...............-------- ( -24.00)
>DroSec_CAF1 28841 99 - 1
GAUGGCCAGCUGUCGGCUACUUCUUAUUGAAAAUGAAUAAACAUCCGAAGCUUGCCAGCUGUCGCUGAAAAACAGCCAAAAAACCUUUCUGUACAAAUU
..((((.((((.((((....(((.....))).(((......))))))))))).))))(((((.........)))))....................... ( -20.50)
>DroSim_CAF1 27072 99 - 1
CAAGGCCAGCUGUCGGCUAUUUCUUAUUGAAAAUGAAUAAACAUCCGAAGCUUGCCAGCUGUCGCUGAAAAACAGCCAAAAAACCUUUCUGUACAAAUU
...(((.((((.((((...((((.....))))(((......))))))))))).))).(((((.........)))))....................... ( -20.80)
>DroEre_CAF1 19342 98 - 1
CAAGCCCAGCUGUCGGCUGUUUCUUAUUGAAAAUGAAUAAUCGUCCAAAGCUUGCCAGCUGCCGCUGAA-AACAGCCAAAAAACAUUUAUCUGCAAUUU
...((.((((((.(((((.((((.....))))((((....))))....))).)).))))))..((((..-..))))................))..... ( -19.80)
>consensus
CAAGGCCAGCUGUCGGCUAUUUCUUAUUGAAAAUGAAUAAACAUCCGAAGCUUGCCAGCUGUCGCUGAAAAACAGCCAAAAAACCUUUCUCUACAAAUU
...(((.((((.((((...((((.....))))(((......))))))))))).))).......((((.....))))....................... (-15.35 = -15.60 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006