Locus 5983

Sequence ID 3R_DroMel_CAF1
Location 15,769,800 – 15,769,920
Length 120
Max. P 0.770216
window9771

overview

Window 1

Location 15,769,800 – 15,769,920
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -26.83
Consensus MFE -23.01
Energy contribution -23.32
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 0.53
SVM RNA-class probability 0.770216
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15769800 120 - 27905053
GCCAUUGAAAACAUAAGCAACUGUCAAUGAUUUAAUGUCUAAAAUCAGAAAUAGUUAUACGUGACAGGUCGCAGAAAUGGCAAGUUCGAGGACCUGGGACAAAACGACACUUUGAUAAAU
((((((............((((((...((((((........))))))...))))))....((((....))))...))))))..((((.((...)).)))).................... ( -25.00)
>DroSec_CAF1 26978 102 - 1
------------------AACUGUCAAUGAUUUAAUGUCUGAGAUCAGAAAUAGUUAUACGUGACAGGUCGCAGAAAUGGCAAGUUCGAGGACCCCGGACAAAACGACACUUUGAUAAAU
------------------..((((((((((((.....((((....))))...))))))...))))))((((((....))....(((((.(....))))))....))))............ ( -26.30)
>DroSim_CAF1 26957 120 - 1
GCCAUUGAAAACAUAAGCAACUGUCAAUGAUUUAAUGUCUGAGAUCAGAAAUAGUUAUACGUGACAGGUCGCAGAAAUGGCAAGUUCGAGGACCCCGGACAAAACGACACUUUGAUAAAU
(((((((....)....((..((((((((((((.....((((....))))...))))))...))))))...))...))))))..(((((.(....)))))).................... ( -28.10)
>DroEre_CAF1 29494 120 - 1
GCCAUUGAAAACAUAAGCAACUGUCAAUGAUUUAAUGUCUGAAAUCAGAAAUAGUUAUACGUGACAGGUCGCAGAAAUGGCAGGUUCGAGGAGCCCGGACAAAACGACACUUUGAUAAAU
(((((((....)....((..((((((((((((.....((((....))))...))))))...))))))...))...))))))..(((((.(....)))))).................... ( -27.90)
>consensus
GCCAUUGAAAACAUAAGCAACUGUCAAUGAUUUAAUGUCUGAAAUCAGAAAUAGUUAUACGUGACAGGUCGCAGAAAUGGCAAGUUCGAGGACCCCGGACAAAACGACACUUUGAUAAAU
....................((((((((((((.....((((....))))...))))))...))))))((((((....))....(((((.(....))))))....))))............ (-23.01 = -23.32 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:46 2006