Locus 597

Sequence ID 3R_DroMel_CAF1
Location 2,215,440 – 2,215,543
Length 103
Max. P 0.939538
window949

overview

Window 9

Location 2,215,440 – 2,215,543
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.64
Mean single sequence MFE -31.07
Consensus MFE -22.21
Energy contribution -22.88
Covariance contribution 0.67
Combinations/Pair 1.20
Mean z-score -2.25
Structure conservation index 0.72
SVM decision value 1.28
SVM RNA-class probability 0.939538
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2215440 103 - 27905053
UGCAAGUGGUGCUCCUGCUUGUGGCCACCGCUGCAGGCAUCAUAAUGCCUUUUCUCAAAACGAGGUAGCUACUUGUGAAUUUG---AUUCCACGUUGAACAUA-UUU
.(((((((((.....((((((..((....))..))))))......((((((..........)))))))))))))))((((.((---.(((......))))).)-))) ( -30.40)
>DroVir_CAF1 4457 97 - 1
UGCAAGUGGUGCUCCUGUUGGUAGCCACCGCUGCUGGCAUUAUAAUGCCCUUUCUCAAAACGAGGUAAGUACACGC-UAUACG---GACUUA---UGU---UAGAUA
.(((.((((((((((....)).)).))))))))).(((((....)))))....(((.....)))((((((...((.-....))---.)))))---)..---...... ( -28.90)
>DroSec_CAF1 4480 103 - 1
UGCAAGUGGUGCUCCUGCUUGUGGCCACCGCUGCAGGCAUCAUAAUGCCUUUUCUCAAAACUAGGUAGCUACUUGUGUAUUCG---AUUCCACGUUGAACACA-ACU
.(((((((((.....((((((..((....))..))))))......(((((............))))))))))))))((.((((---((.....)))))).)).-... ( -33.00)
>DroSim_CAF1 4484 103 - 1
UGCAAGUGGUGCUCCUGCUUGUGGCCACCGCUGCAGGCAUCAUAAUGCCUUUUCUCAAAACGAGGUAGCUACUUGUGUAUUCG---AUUUCACGUUGAACACA-ACU
.(((((((((.....((((((..((....))..))))))......((((((..........)))))))))))))))((.((((---((.....)))))).)).-... ( -33.80)
>DroYak_CAF1 3835 106 - 1
UGCAAGUGGUGCUCCUGCUUGUGGCCACCGCUGCAGGCAUCAUAAUGCCUUUUCUCAAAACGAGGUAACUACUUCUGACUACUACUAUUUCACGAUGAGCACU-AUU
....((((((((((.((((((..((....))..))))))......((((((..........)))))).............................)))))))-))) ( -31.30)
>DroMoj_CAF1 4846 102 - 1
UGCAAGUGGUGCUGCUGUUGGUGGCAACCGCUGCUGGCAUUAUUAUGCCGUUUCUCAAAACGAGGUAAGUACACGG-UCUACA---UACGCA-AAUGUAUAUAUAUA
.(((.(((((((..(.....)..)).)))))))).(((((....)))))....(((.....)))(((.(((((..(-(.....---...)).-..))))).)))... ( -29.00)
>consensus
UGCAAGUGGUGCUCCUGCUUGUGGCCACCGCUGCAGGCAUCAUAAUGCCUUUUCUCAAAACGAGGUAACUACUUGUGUAUACG___AUUUCACGUUGAACACA_AUU
.(((((((((.....((((((((((....))))))))))......((((((..........)))))))))))))))............................... (-22.21 = -22.88 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:01 2006