| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,743,282 – 15,743,394 |
| Length | 112 |
| Max. P | 0.899267 |
| Location | 15,743,282 – 15,743,394 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 72.14 |
| Mean single sequence MFE | -34.25 |
| Consensus MFE | -16.29 |
| Energy contribution | -17.93 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15743282 112 - 27905053 CGAAGGCCAACGAGGUAUCUCCUCAAACUCCACACCCGAAAGCAAAUAAUCUAGCAGAUGACAACGAUGACGAUGUCAUCACACACAUCAUGGGGAACUUUGGGCCCUGGCA ....((((...((((.....))))...(((((....(....)..............(((((((.((....)).)))))))..........))))).......))))...... ( -31.40) >DroSec_CAF1 515 112 - 1 CGAAGGCCAACGAGGUAUCUCCUCAAACUCCUCCCCCGAAAGCAAAUAAUCUAGCAGAUGACAACGACGACGAUGUAAUCACACACAUCAUGGGGGACUUUGGGCCCUGGCA ....((((...((((.....)))).......(((((((...((..........)).(((.(((.((....)).))).)))..........))))))).....))))...... ( -32.00) >DroSim_CAF1 515 112 - 1 CGAAGGCCAACGAGGUAUCUCCUCAAAAUCUUCCCCCGAAAGCAAAUAAUCUAGCAGAUGACAACGACGACGAUGUCAUCACACACAUCAUGGGGGACUUUGGGCCCUGGCA ....((((...((((.....)))).......(((((((...((..........)).(((((((.((....)).)))))))..........))))))).....))))...... ( -38.30) >DroEre_CAF1 515 112 - 1 CGAGGGCCAACGAGGUAUCUCCUCAAACUGCUCCCCCCAAAUCAAGCAAAACAGUAGAGGACAAUGAAGACGAUGUGAUCACGCACAUCCUGGGGGACUUCGGGCCUUGGCA (((((.((...((((.....)))).........((((((......((......))................((((((......)))))).)))))).....)).)))))... ( -36.40) >DroYak_CAF1 443 103 - 1 CGAAAGCCAACGA---------UCAAACUCCACCUACCAAGGCCAACAAAACGGUAGAUGGCAGUGAUGACGAUGUGAUCGCACACGUCCUGGGGGACUUUGGGCCUUGGCA .....(((((.(.---------.((((.(((.((((.((..((((((......))...))))..))..((((.((((....)))))))).))))))).))))..).))))). ( -35.50) >DroPer_CAF1 521 91 - 1 CGGAGGCCAAUGAGCAGGCUACU------CCACCACCGACUGGGAAUCCAUCCGC---------------AGACGUUAUUGGGCACUUGCUGGGAGACUUUGGGCUCUGGCA (((((.((((..((((((....(------(((....((.((((((.....))).)---------------)).))....))))..))))))((....)))))).)))))... ( -31.90) >consensus CGAAGGCCAACGAGGUAUCUCCUCAAACUCCACCCCCGAAAGCAAAUAAACCAGCAGAUGACAACGACGACGAUGUCAUCACACACAUCAUGGGGGACUUUGGGCCCUGGCA ....((((...((((.....))))........(((((....((..........))................(((((........)))))..)))))......))))...... (-16.29 = -17.93 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:08 2006