Locus 5947

Sequence ID 3R_DroMel_CAF1
Location 15,688,155 – 15,688,255
Length 100
Max. P 0.531495
window9704

overview

Window 4

Location 15,688,155 – 15,688,255
Length 100
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -15.03
Consensus MFE -12.33
Energy contribution -12.56
Covariance contribution 0.23
Combinations/Pair 1.11
Mean z-score -1.31
Structure conservation index 0.82
SVM decision value -0.00
SVM RNA-class probability 0.531495
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15688155 100 - 27905053
ACAUCAAAAAGA-------AAAUCAACAAAAAUGUUGAGAUGAAAUUAAUCCUAGGUUACUUCCCUUUAGUUAUUCUAUCCAAUAUAAGCUACAGUCAAUUAACAAA
.((((.......-------...((((((....)))))))))).............((((.((..((.(((((...............))))).))..)).))))... ( -11.06)
>DroSec_CAF1 215910 107 - 1
UAGUCAACAGUCAUUUUUUAUUUAAACAAAUAUUUUGGGAUGAAAUGAAUCCCAGGUUACUUCCCUUUAGUUAUCCUAUUCAAUAUAAACUAGAGUCCAUUAACAAU
..................................(((((((.......)))))))((((.....((((((((...............)))))))).....))))... ( -15.76)
>DroSim_CAF1 211860 107 - 1
UAGUCAACAGUCAUUUUUUAUUUAAACAAAUAUUUUGGGAUGAAAUGAAUCCCAGGUUAAUUCCCUUUAGUUAUCCUAUCCAAUAUAAACUAGAGUCCAUUAACAAU
..................................(((((((.......)))))))((((((...((((((((...............))))))))...))))))... ( -18.26)
>consensus
UAGUCAACAGUCAUUUUUUAUUUAAACAAAUAUUUUGGGAUGAAAUGAAUCCCAGGUUACUUCCCUUUAGUUAUCCUAUCCAAUAUAAACUAGAGUCCAUUAACAAU
..................................(((((((.......)))))))((((.....((((((((...............)))))))).....))))... (-12.33 = -12.56 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:39 2006