Locus 5946

Sequence ID 3R_DroMel_CAF1
Location 15,686,974 – 15,687,070
Length 96
Max. P 0.500000
window9703

overview

Window 3

Location 15,686,974 – 15,687,070
Length 96
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.73
Mean single sequence MFE -26.92
Consensus MFE -16.79
Energy contribution -17.52
Covariance contribution 0.73
Combinations/Pair 1.27
Mean z-score -1.39
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15686974 96 + 27905053
UUUCCAAUUA-------CGUUCGCCAUUGUUGAGUUGAGAGUUCGUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCAGAUAAUUGGGAAAAGACCGUACUGGUU
((((((((((-------(...(.(((((((((..(((...(((((.....)))))....-)))..))))))))))..).))))))))))..((((.....)))) ( -26.90)
>DroSec_CAF1 214739 96 + 1
UUUACAAUUA-------CGUUCGCCAUUGUUGGGUUGAGAGUUCGUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCGGAUAAUUGGGAAAAGACCGUGCAGGUU
((..(((((.-------.((((((((((((((..(((...(((((.....)))))....-)))..))))))).))))))))))))..))..((((.....)))) ( -26.70)
>DroSim_CAF1 210689 96 + 1
UUUACAAUUA-------CGUUCGCCAUUGUUGAGUUGAGAGUUCGUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCGGAUAAUUGGGAAAAGACCGUGCAGGUU
((..(((((.-------.((((((((((((((..(((...(((((.....)))))....-)))..))))))).))))))))))))..))..((((.....)))) ( -27.20)
>DroEre_CAF1 192289 96 + 1
UUUCCAAUUA-------CGUUCGCCAUUGUUCAGUUGAGAGUUCAUCGAAUGAGCGGAG-UAGAGUGACAGUGGGCGGAUGUUUGGGAAAAGGCCAUGCAAGCU
(((((((..(-------(((((((((((((.((.((....((((((...))))))....-..)).))))))).))))))))))))))))..(((.......))) ( -31.30)
>DroYak_CAF1 214059 96 + 1
UUUCCAAUUA-------CGUUCGCCAUUGUUGAGUUGAGAGUUCAUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCGGAUAUUUGGAAAAAGACCGUGCAGGUU
(((((((...-------.((((((((((((((..(((...((((((...))))))....-)))..))))))).)))))))..)))))))..((((.....)))) ( -32.10)
>DroAna_CAF1 208763 89 + 1
--UUCAAUUAAUUCUGCCAUUUGCCAUUGUUGAGUGUUGAGUUUUGCUUGUGAAAUGAGCUCGAGUGACGAUGG-------------AGAAGACCUAACGCGUU
--.................((..(((((((((....((((((((..(....)....)))))))).)))))))))-------------..))((((....).))) ( -17.30)
>consensus
UUUCCAAUUA_______CGUUCGCCAUUGUUGAGUUGAGAGUUCGUCGAGUGAGCGGAG_UAGAGUGACAGUGGGCGGAUAAUUGGGAAAAGACCGUGCAGGUU
..................((((((((((((((..(((...(((((.....))))).....)))..))))))))).)))))...........((((.....)))) (-16.79 = -17.52 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:38 2006