| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,655,210 – 15,655,303 |
| Length | 93 |
| Max. P | 0.620040 |
| Location | 15,655,210 – 15,655,303 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.95 |
| Mean single sequence MFE | -16.95 |
| Consensus MFE | -8.31 |
| Energy contribution | -8.50 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15655210 93 - 27905053 AGCGAAUUGUUUUUGUUGGCCAUUUUAUUUUUAAACAAUUUGCCUGUCC----GCCACUCUUGAAGGGGCUUUCCCUCUCACUCUCUCUCUUCGUUU------- .(((((((((((....................)))))))))))......----........(((..(((....)))..)))................------- ( -16.65) >DroVir_CAF1 319339 91 - 1 CGCGAAUUGUUUUUGUUGCCACAUUUAUUUUUAAACAAUUUGCCAGUCGCGUUGCGACUCUUGAG---UUUUUCCCUUG----------CUUCAUUUUGCGAGU .(((((((((((....................))))))))))).((((((...))))))......---.......((((----------(........))))). ( -21.95) >DroGri_CAF1 217282 94 - 1 UGCGAAUUGUUUUUGUUGCCACAUUUAUUUUUAAACAAUUCACCAGUCGCGCUGC--CUCUUCAG---UUUUUCCCUUGCAUGG-----CUUCAUUUUCAAAUU .((((...((..(((((................)))))...))...))))(..((--(....(((---........)))...))-----)..)........... ( -11.79) >DroSec_CAF1 183398 91 - 1 AGCGAAUUGUUUUUGUUGCCCAUUUUAUUUUUAAACAAUUUGCCUGUCC----GCCACUCUUGAAGUGGCUUUCCCUCUCACUCU--CUCUUCGUUU------- .(((((((((((....................)))))))))))......----((((((.....))))))...............--..........------- ( -18.85) >DroSim_CAF1 178919 91 - 1 AGCGAAUUGUUUUUGUUGCCCAUUUUAUUUUUAAACAAUUUGCCUGUCC----GCCACUCUUGAAGGGGCUUUCCCUCUCACUCU--CUCUUCGUUU------- .(((((((((((....................)))))))))))......----........(((..(((....)))..)))....--..........------- ( -16.65) >DroEre_CAF1 160885 89 - 1 AGCGAAUUGCUUUUGUUGCCCAUUUUAUUUUUAAACAAUUUGCCUGUCC----GCCACUCUUGAAGGGGCUUGCUCUCUCACUCG--CUC--CCUUU------- .(((.((.((..(((((................)))))...))..)).)----)).......((((((((..(........)..)--).)--)))))------- ( -15.79) >consensus AGCGAAUUGUUUUUGUUGCCCAUUUUAUUUUUAAACAAUUUGCCUGUCC____GCCACUCUUGAAGGGGCUUUCCCUCUCACUCU__CUCUUCGUUU_______ .(((((((((((....................)))))))))))............................................................. ( -8.31 = -8.50 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:29 2006