Locus 5937

Sequence ID 3R_DroMel_CAF1
Location 15,645,603 – 15,645,700
Length 97
Max. P 0.989559
window9690

overview

Window 0

Location 15,645,603 – 15,645,700
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 86.46
Mean single sequence MFE -25.58
Consensus MFE -20.92
Energy contribution -21.92
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.53
Structure conservation index 0.82
SVM decision value 2.17
SVM RNA-class probability 0.989559
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15645603 97 + 27905053
AAAACUGAAAGAAAAAAAAAGGCAAACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC
....................(...(((((....)))))...)...(((((.....)))))((((((.((((((.(((....))).)))))))))))) ( -25.30)
>DroSec_CAF1 173931 94 + 1
AAAACUGAAAGAAAAAGA--GAC-AACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC
..................--..(-(((((....))))))(((((.(.....).)))))..((((((.((((((.(((....))).)))))))))))) ( -28.10)
>DroSim_CAF1 168592 95 + 1
AAAACUGAAAGAAAAAGA-AGGC-AACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC
..................-...(-(((((....))))))(((((.(.....).)))))..((((((.((((((.(((....))).)))))))))))) ( -27.80)
>DroEre_CAF1 151777 83 + 1
AAAACAGAAAA----AGG--A----AC---AUACUGCUGCACAAGUUAACAAGUUGUUG-GCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC
...........----...--(----((---(.(((...((....)).....))))))).-((((((.((((((.(((....))).)))))))))))) ( -22.50)
>DroYak_CAF1 175734 84 + 1
AAGACAGAAAAA---AGA--A----AC---AUACUGUUGAACAAGUUAACAAGUUGUUG-GCCCCCAGGCAGCGGAGCACUUUCAAUUGUCGGGGGC
............---...--(----((---(.((((((((.....))))).))))))).-((((((.(((((..(((....)))..))))))))))) ( -24.20)
>consensus
AAAACUGAAAGAAAAAGA__G_C_AACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC
...............................(((((((((.....))))).)))).....((((((.((((((.(((....))).)))))))))))) (-20.92 = -21.92 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006