Locus 5936

Sequence ID 3R_DroMel_CAF1
Location 15,645,063 – 15,645,167
Length 104
Max. P 0.637363
window9689

overview

Window 9

Location 15,645,063 – 15,645,167
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 86.80
Mean single sequence MFE -30.72
Consensus MFE -24.18
Energy contribution -25.10
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.79
SVM decision value 0.21
SVM RNA-class probability 0.637363
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15645063 104 - 27905053
UACCGCCACCUCACUUCCACUUCCACUCCCACGCGAGCUCGAGACCUCCAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU
((((((...((((((((........(((......)))...((((.(((........))).))))..))))))))(((....))).))))))............. ( -29.80)
>DroSec_CAF1 173391 104 - 1
UACCGCCACCUCACUUCCACUCCCACUCCCACGCGAUCUCGAGACCUCCAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU
....................(((((....(((((..(((...((((((...(((..(((....)))..)))))))))...)))..)).))).....)))))... ( -31.10)
>DroSim_CAF1 168052 104 - 1
UACCGCCACCUCACUUCCACUCCCACUCCCACGCGAUCUCGAGACCUCAAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU
....................(((((....(((((..(((...(((((((...((.(((....))).))..)))))))...)))..)).))).....)))))... ( -31.20)
>DroEre_CAF1 151270 85 - 1
-----------------CACUCCCACUCCCACGCGAUCUCGAGGCCUCCAGAGCAAGACAUC--UCGGGGCGAGGUCCACGGACAGCCGUGAUCUAUGGGAAAU
-----------------.........(((((...((((((...(((((.(((........))--).)))))))))))(((((....))))).....)))))... ( -31.20)
>DroYak_CAF1 175194 102 - 1
UACCGCUACCUCACUCACACUCCAACUCCCACGCGAUCUCGAGACCUCCAGACCAAGAGAUC--UCGGGGCGAGGUCCACAGACAGCCGUGAUCCAUGGGAAAU
..........................(((((.(.((((((((((.(((........))).))--))))(((...(((....))).)))..))))).)))))... ( -30.30)
>consensus
UACCGCCACCUCACUUCCACUCCCACUCCCACGCGAUCUCGAGACCUCCAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU
....................(((((....(((((..(((...((((((...(((..(((....)))..)))))))))...)))..)).))).....)))))... (-24.18 = -25.10 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006