| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,200,394 – 2,200,513 |
| Length | 119 |
| Max. P | 0.625734 |
| Location | 2,200,394 – 2,200,513 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -18.47 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2200394 119 + 27905053 CAAACAUGUGGCUUGCAACGCAUCAAUCGUAAGUUACUAAACUAAAAUGUGUGCCACGUGAUA-ACAACCAACUAAUUCAAAUUAACAAAACAACAUUUUUUGUUCGCAUACACUAUAUA .......(((((((((............)))))))))..........(((((((...((....-))..................(((((((.......))))))).)))))))....... ( -19.70) >DroEre_CAF1 3754 112 + 1 CCAACAUGUGGCUUGCAAUGAAACAACCGUGAGUUACUAAGCUAAAAUGCCUGCCACGUGAUAAAUAACCAAAUAAUUUACAUUAGU------ACAUUUUUUGUUCACAUAUAUACU-U- ....((((((((..((((((.......))).((((....))))....)))..)))))))).........((((.(((.(((....))------).))).))))..............-.- ( -21.10) >DroYak_CAF1 3629 112 + 1 GAAGCAUGUGGCUUGCAACACAACAGCCGUGAGUUACCAAUCUAAAAUGCCUGCCACGCGAUAAAUAACCAAAUAACUUAAAUUAAU------ACAUUUUUUGUUCACAUACACACG-U- ...((..(((((..(((.(((.......)))((........))....)))..)))))))............................------........................-.- ( -14.60) >consensus CAAACAUGUGGCUUGCAACGCAACAACCGUGAGUUACUAAACUAAAAUGCCUGCCACGUGAUAAAUAACCAAAUAAUUUAAAUUAAU______ACAUUUUUUGUUCACAUACACACU_U_ ....((((((((..((((((.......))).((((....))))....)))..))))))))............................................................ (-14.25 = -14.70 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:57 2006