| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,610,136 – 15,610,240 |
| Length | 104 |
| Max. P | 0.868049 |
| Location | 15,610,136 – 15,610,240 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 83.27 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -25.53 |
| Energy contribution | -25.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15610136 104 + 27905053 ---U-CAUAAUAUUCAAUCCA-UUCCAGCUUUGUCACUGGCCAGGAUGUGCUGCUCUCCUUCAGCACCAUCGAUUGGUCUGCGGGUAUGUUCAACAUGCUCUUCAGUUG ---.-........((((((..-..((((........))))....(((((((((........))))).)))))))))).(((.(((((((.....)))))))..)))... ( -27.90) >DroVir_CAF1 255410 107 + 1 UACUAAUUAAUACUCCUU-C-UCUACAGCUUUGUCACCGGCCAGGAUGUGCUGCUCUCGUUCAGCACGAUCGACUGGGCGCCGGGUAUGUUCAACAUGCUCUUCAGCUG ..................-.-....(((((.......((.(((((((((((((........)))))).)))..)))).))..(((((((.....)))))))...))))) ( -32.10) >DroSec_CAF1 134123 104 + 1 ---U-CAUAAUAUUCAUUCUA-UUCCAGCUUUGUCACAGGCCAGGAUGUGCUGCUCUCCUUCAGCACCAUCGACUGGUCAGCGGGUAUGUUCAACAUGCUCUUCAGUUG ---.-................-...(((((........(((((((((((((((........))))).))))..))))))...(((((((.....)))))))...))))) ( -30.20) >DroSim_CAF1 120234 104 + 1 ---U-CAUAAUAUUCAUUCUA-UUCCAGCUUUGUUACUGGCCAGGAUGUGCUGCUCUCCUUCAGCACCAUCGACUGGUCGGCGGGUAUGUUCAACAUGCUCUUCAGUUG ---.-................-...(((((......(((((((((((((((((........))))).))))..)))))))).(((((((.....)))))))...))))) ( -32.70) >DroEre_CAF1 115660 97 + 1 -----------ACUCACUCUU-UUCCAGCUUUGUCACUGGCCAGGAUGUGCUGCUGUCCUUCAGCACCAUCGACUGGUCGGCGGGGAUGUUCAACAUGCUCUUCAGCUG -----------..........-...(((((......((((((((...(((.(((((.....))))).)))...)))))))).(((.(((.....))).)))...))))) ( -33.20) >DroAna_CAF1 130801 106 + 1 UAUU--AAAAUCUUGAAUAUC-UUUCAGUUUUGUUACCGGACAGGAUGUACUGCUGUCCUUCAGCACCAUUGACUGGUCUGCCGGAAUGUUCAACAUGCUCUUCAGCUG ....--......((((((((.-..(((((..((((...((((((.(.....).))))))...))))..)))))((((....)))).))))))))...(((....))).. ( -25.90) >consensus ___U_CAUAAUAUUCAUUCUA_UUCCAGCUUUGUCACUGGCCAGGAUGUGCUGCUCUCCUUCAGCACCAUCGACUGGUCGGCGGGUAUGUUCAACAUGCUCUUCAGCUG .........................(((((........(((((((((((((((........)))))).)))..))))))...(((((((.....)))))))...))))) (-25.53 = -25.87 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:02 2006