Locus 5924

Sequence ID 3R_DroMel_CAF1
Location 15,605,448 – 15,605,568
Length 120
Max. P 0.527539
window9674

overview

Window 4

Location 15,605,448 – 15,605,568
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.33
Mean single sequence MFE -41.23
Consensus MFE -23.04
Energy contribution -23.85
Covariance contribution 0.81
Combinations/Pair 1.36
Mean z-score -2.27
Structure conservation index 0.56
SVM decision value -0.01
SVM RNA-class probability 0.527539
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15605448 120 - 27905053
CAGUUUUUGAGCGCUGGUUUUUGGGCAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUGAUGGUCCAGGAGACUUCGUGCUGCUCACAAAUGUCCAGGAAAUGUGCCGUACUGAACAU
((((...((.((((...((((((((((.(((((((.((((((((.((....)))))))))).))).))))(((.(........)))).....))))))))))..)))))).))))..... ( -46.70)
>DroPse_CAF1 140454 120 - 1
CAACUUUUGGGCCUUGGUUUGCGGACAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUAAUACACCAGGAGAUUUCAUGCUGCUCACAGAUCUCCAGAAAGUGCCCAGGACUAAACAU
....(((((((((((.......((.....(((((((((((....))))....))))))).......)).((((((((............))))))))...))).))))))))........ ( -36.20)
>DroEre_CAF1 110201 120 - 1
CAGUUUUGGAGCACUGGUUUUGGGACAAUUGGCCAACAUGGCCACAUGGGAGUUGGCCAUGAUGGUCCAGGAGACUUCGUGCUGCUCACAAAGGUCCAGGAAGUGUGCUGUACUGAACAU
..((((((.(((((.(.(((..((((..(((((((.(((((((((......).)))))))).))).))))....(((.(((.....))).)))))))..))).)))))).))..)))).. ( -44.20)
>DroYak_CAF1 123603 120 - 1
CAGUUUUUGAGCAUUGGUUUUUGGACAAUUGGCCAGCAUGGCCACAUGGGAGUUGGCCAUGAUGGUCCAAGAGACUUCGUGCUGCUCACAAAGGUCCAGGAAGUGUGCGGUACUGAAAAU
((((......((((...(((((((((..(((((((.(((((((((......).)))))))).))).))))....(((.(((.....))).))))))))))))..))))...))))..... ( -44.60)
>DroAna_CAF1 125763 120 - 1
CAGUUUCUGAGCACGAGUUUGCGGACAAUUCGCCAGCAUAGCCACGUGGGAGUUGGCCAUAACAGUCCAACUGACUUCGUGCUGUUCGCACAGCUCCAAAAAAUGGCCAGUGCUGAACAU
..((((...(((((..(((.(((((...))))).)))...((((..(.(((((((((...(((((..(..........)..))))).)).)))))))...)..))))..))))))))).. ( -39.50)
>DroPer_CAF1 156007 120 - 1
CAACUUUUGGGCCUUGGUUUGCGAACAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUAAUACACCAGGAGAUUUCAUGCUGCUCACAGAUCUCCAGAAAGUGCCCAGGACUAAACAU
....(((((((((((((((((....))).(((((((((((....))))....)))))))......))).((((((((............))))))))...))).))))))))........ ( -36.20)
>consensus
CAGUUUUUGAGCACUGGUUUGCGGACAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUAAUAGUCCAGGAGACUUCGUGCUGCUCACAAAGCUCCAGAAAGUGUCCAGUACUGAACAU
((.(((((((((((.(((((((((((...(((((((((((....))))....))))))).....)))).)))))))..)))))(....).......)))))).))............... (-23.04 = -23.85 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:00 2006