Locus 591

Sequence ID 3R_DroMel_CAF1
Location 2,195,673 – 2,195,772
Length 99
Max. P 0.520592
window942

overview

Window 2

Location 2,195,673 – 2,195,772
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 87.00
Mean single sequence MFE -33.93
Consensus MFE -27.17
Energy contribution -26.50
Covariance contribution -0.66
Combinations/Pair 1.29
Mean z-score -1.84
Structure conservation index 0.80
SVM decision value -0.03
SVM RNA-class probability 0.520592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2195673 99 - 27905053
UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCUACCAGGCGCUGGGCAUCUAGCAAGUGCUCGAGGUUCUUGAGUGCUACCUCGGCA
.((((.........((((((((((((((((((.............)))).)).)))))).)))))).((..((((((...))))))..)).....)))) ( -39.62)
>DroSec_CAF1 14921 99 - 1
UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCCACCAGACGCUGGGCAUCUAGCAAGUGCUCCAGGUUCGUGAGUGCCACCUCGGCA
.((((.........((((((((((((((((((.............)))).)).)))))).))))))..........(((.(....).))).....)))) ( -34.02)
>DroSim_CAF1 14810 99 - 1
UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCCACCAGACGCUGGGCAUCUAGCAAGUGCUCCAGGUUCUUGAGUGCCACCUCGGCA
..((((........((((((((((((((((((.............)))).)).)))))).))))))(((.((.....)).)))))))(((.....))). ( -34.62)
>DroEre_CAF1 15860 99 - 1
UUACUCUGUUCAUCGCUGGAGCCCAGGUUGGUAAUAAUCUCCGCCACCAGGCGCUGGGCAUCUAGCAGGUACUCCAGGUUUUUGAGUGCUACUUCGGCA
..((((.....(((((((((((((((...(((....)))..((((....)))))))))).)))))).((....)).)))....))))(((.....))). ( -34.50)
>DroYak_CAF1 13903 99 - 1
UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUAAUUAUCUCCGCCACUAGGCGCUGGGCAUCUAGCAAGUGCUCUAUGUUUUUGAGUGCUACUUCGGCA
.((((.........((((((((((((...(((....)))..((((....)))))))))).)))))).((..(((.........)))..)).....)))) ( -37.30)
>DroAna_CAF1 24556 99 - 1
UUACUUUGAUCAUCACUGGACCCUAAAUUGGUUAUAAUCUCUGCCACCAAGCGCUGGGCAUCUAGUAGGUGUUCCAAGUCCUUUAAUACAGCUUCUGCG
..((((.((.(((((((((((((....(((((..((.....))..))))).....)))..)))))).)))).)).))))...........((....)). ( -23.50)
>consensus
UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCCACCAGGCGCUGGGCAUCUAGCAAGUGCUCCAGGUUCUUGAGUGCUACCUCGGCA
..............((((((((((((((((((.............)))).)).)))))).))))))..((((((.........)))))).......... (-27.17 = -26.50 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:54 2006