| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,193,089 – 2,193,200 |
| Length | 111 |
| Max. P | 0.564608 |
| Location | 2,193,089 – 2,193,200 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.34 |
| Mean single sequence MFE | -44.52 |
| Consensus MFE | -28.26 |
| Energy contribution | -28.35 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2193089 111 + 27905053 GCUGUUGCCGUACAUUGGGUGGUGGCUGGGAAAGCAGCGGUGCUGCCGCAUUGGGUGGUGGCUGGCUCAUCAGGUGCGGCGGAGGUUGUGAGGUAAGAUGUGACGACACUG .((.(((((((((..(((((.(..((((......))))...((..((((.....))))..))).)))))....)))))))))))(((((.(.((...)).).))))).... ( -42.20) >DroVir_CAF1 12842 111 + 1 GUUGCUGUCGCACAUUCGGAGGCGGCUGGCUAAGCAGCGGCGCCGCAGCAUUGGGCGGUGGUUGGUUCAAUAGAUGCGGCGGUGGUUGCGAGGUCAAAUGUGAAUGGCCAG ((((((..((......))..))))))((((((.(((((.((((((((..(((((((.(....).)))))))...)))))).)).)))))....(((....))).)))))). ( -46.20) >DroPse_CAF1 16330 108 + 1 GCUGUUGUCGCACAUUGGGCGGAGGCUGCGACAGCAGCGGACCGGCUGCAUUCGGAGGGGGUUGGCUCAUCAGAUGAGGCGGUGGCUGCGAUGUCAGAUGGG---GUACUG ((((((((((((......((....))))))))))))))...((((((.(........).))))))((((((.((((..((((...))))..)))).))))))---...... ( -41.50) >DroGri_CAF1 13387 111 + 1 GCUGUUGUCGCACAUUCGGUGGCGGCUGACUGAGCAGCGGUGCCGCUGCAUUCGGCGGUGGUUGAUUCAAUAGAUGCGGCGGUGGCUGCGACGUCAAAUGCGAAUGUCCUG (((((..(((......)))..)))))((((...(((((...(((((((((((((((....)))))........)))))))))).)))))...))))............... ( -44.70) >DroYak_CAF1 11728 111 + 1 GCUGUUGGCGCACAUUUGGUGGCGGCUGGGAAAGCAACGGCGCUGCCGCAUUUGGUGGAGGCUGGCUCAUCAGAUGCGGCGGCGGUUGCGAAGUAAGAUGUGAUGACACAG .((((...(((((((((..(.((((((......((....))((((((((((((((((.((.....)))))))))))))))))))))))).)....))))))).))..)))) ( -50.00) >DroPer_CAF1 12289 108 + 1 GCUGUUGUCGUACAUUGGGCGGAGGCUGCGACAGCAGCGGACCGGCUGCAUUCGGCGGGGGUUGGCUCAUCAGAUGAGGCGGUGGCUGCGAUGUCAGAUGGG---GUACUG (((((((((((......(((....))))))))))))))...((.((((....)))).))(((.(.((((((.((((..((((...))))..)))).))))))---.)))). ( -42.50) >consensus GCUGUUGUCGCACAUUGGGUGGCGGCUGGGAAAGCAGCGGAGCCGCUGCAUUCGGCGGUGGUUGGCUCAUCAGAUGCGGCGGUGGCUGCGAGGUCAGAUGUGA__GUACUG (((((((((........))))))))).......(((((.(..((((((((((.((.((........)).)).))))))))))).)))))...................... (-28.26 = -28.35 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006