| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 331,148 – 331,268 |
| Length | 120 |
| Max. P | 0.924623 |
| Location | 331,148 – 331,268 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.17 |
| Mean single sequence MFE | -51.05 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.68 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.34 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 331148 120 - 27905053 GAGAUUGAGCGAAAGAGAUGCGCCCGCCUGGCGGAGUGGGAGGCGGAGAAGGCGAACCACGUGGCCUUCUGCAGGGAAACGCAACGGUUAGAAGCCGAAGCUCUGGCCAAUAUCGCCCAG .....((.((((....(.(((((((((((..(.....)..))))))(((((((.(......).)))))))))..(....)))).)(((((((.((....)))))))))....)))).)). ( -45.20) >DroPse_CAF1 8896 120 - 1 GAGAUCCAUCGCCGCAGGUGCGAAAAGCUGGCCAUAUGGGAGGCCGAAAAGGCCGAGCAUGCCGCCUUCUGUCGCGAAACAGAGCGCCUGGAGGCGGAGGCCAGAGAGAAGAUCGCCCAA ..((((..((..(((....))).....((((((.((((...((((.....))))...))))((((((((.(.(((........))).).)))))))).)))))).))...))))...... ( -52.20) >DroEre_CAF1 11464 120 - 1 GAGAUCGAGCGAAAAAGAUGCGCCCGCCUGGCGGACUGGGAGUCGGAGAAGAAUGACCACAUGGCCUUCUGCCGGGAAACGCAACGGUUGGAAGCCGAGGCUCUGGCCAAGAUCGCUCAG ......((((((....(.((((....(((((((((..(((.((((........)))).......))))))))))))...)))).)(((..((.((....))))..)))....)))))).. ( -48.60) >DroYak_CAF1 10766 120 - 1 GAGAUCGAGCGAAAAAAAUGCGCCCGCCUGACGGAGUGGGAGGUGGACAAGGCAGACCACAUGGCCUUCUGCCGGGAAACGCAACGAUUGCAGGCCGAAGGCCUGGCCAAGAUUGCUCAG ......((((((.........(.((((((..(.....)..)))))).)..(((.........(((((((.(((.(....)(((.....))).))).)))))))..)))....)))))).. ( -46.30) >DroAna_CAF1 15468 120 - 1 GAGAUCGAGCGGAAGCGGUGCGCCCGCCUCAAGGAGUGGGAGGAAGAGAAGGCCGAGCACUUGGCCUUCUGCCGGGAGACCCAGCGCCUGGAGGCGGAGGCCCGCGAGAAGAUCGAAAAG ..((((...(....((((.((..(((((((.(((.((.(..((...((((((((((....)))))))))).))((....))).)).))).)))))))..))))))..)..))))...... ( -60.70) >DroPer_CAF1 8881 120 - 1 GAGAUCCAUCGCCGCAAGUGCGCCAAGCUGGCCAUAUGGGAGGCCGAAAAGGCCGAGCAUGCCGCCUUCUGUCGCGAAACAGAGCGCCUGGAGGCGGAGGCCAGAGAGAAGAUCGCCCAA ..((((..(((((....).))......((((((.((((...((((.....))))...))))((((((((.(.(((........))).).)))))))).)))))).))...))))...... ( -53.30) >consensus GAGAUCGAGCGAAAAAGAUGCGCCCGCCUGGCGGAGUGGGAGGCGGAGAAGGCCGACCACGUGGCCUUCUGCCGGGAAACGCAACGCCUGGAGGCCGAGGCCCGGGACAAGAUCGCCCAG ..((((..((.........................(((...(((.......)))...))).((((((((.(.((..........)).).))))))))........))...))))...... (-17.57 = -17.68 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:41 2006