Locus 589

Sequence ID 3R_DroMel_CAF1
Location 2,192,533 – 2,192,653
Length 120
Max. P 0.736871
window940

overview

Window 0

Location 2,192,533 – 2,192,653
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.28
Mean single sequence MFE -48.38
Consensus MFE -26.38
Energy contribution -26.97
Covariance contribution 0.59
Combinations/Pair 1.29
Mean z-score -1.77
Structure conservation index 0.55
SVM decision value 0.44
SVM RNA-class probability 0.736871
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2192533 120 - 27905053
ACCAGGAUCAGGGCCGCCGGGAUUUGAUCCGCAUGCUGCUUUUGCGGCUGCUGCUGCAGCAAUGAAAGCCAAUUCGGAAAACACUAAGGCUGCACAGGCAGCUGCUUUGGAGAAAGAGGC
.(((((((((((.((....)).))))))))(((.(((((((.(((.(((((....)))))......((((.................))))))).))))))))))..))).......... ( -48.13)
>DroVir_CAF1 12262 117 - 1
GCCGGGUGCUGC---ACCUGGCUUUGAUCCGCAAAUGGCAUUCGCAGCCGCUGCGGCAGCCAUGAAGGCUAACAGUGAAAACAACAAGGCUGCACAGGCCGCAGUGCUGGAGAAGGAGGC
((((((((...)---))))))).....(((.....(((((((.((.(((..((((((((((.....))))....((....))......))))))..))).))))))))).....)))... ( -50.30)
>DroPse_CAF1 15750 120 - 1
UCCGGGCACGGCGCCACCGGGAUUUGAUCCCCAAAUGGCGUAUGCGGCAGCUGCCGCCGCCAUGAAAGCGAACACCGAGAGUGCAAAGGCAUCGCAGGCAGCCGCCUUGGAAAAGGAGGC
.(((....))).(((...(((((...)))))...((((((...(((((....)))))))))))....((((....(....)(((....))))))).))).(((.((((....)))).))) ( -49.70)
>DroYak_CAF1 11172 120 - 1
ACCGGGAUCAGCGCCGCCAGGAUUUGAUCCGCAUGCCGCUUUUGCGGCUGCUGCUGCAGCAAUGAAAGCGAAUUCAGAAAACACCAAGGCUGCGCAGGCAGCUGCUUUGGAGAAAGAGGC
....(((((((..((....))..)))))))....(((.((((((((((((((((.(((((..((((......))))............)))))))).))))))))......))))).))) ( -46.44)
>DroAna_CAF1 20043 120 - 1
UCCAGGCUCAGCUCCCCCCGGAUUUGAUCCGCAUGCAGCUUUUGCAGCAGCUGCCGCCGCCAUGAAAGCCAACACGGAGAACUCAAAGGCGGCUCAGGCGGCCGCUCUGGAGAAGGAAGC
(((((((..((((.(...(((((...)))))...).))))...))(((.((((((((((((.(((...((.....)).....)))..))))))...)))))).))))))))......... ( -46.10)
>DroPer_CAF1 11708 120 - 1
UCCGGGCACGGCGCCACCGGGAUUUGAUCCCCAAAUGGCGUACGCGGCAGCUGCCGCCGCCAUGAAAGCGAACACCGAGAGUGCAAAGGCAUCGCAGGCAGCCGCCUUGGAAAAGGAGGG
((((((..(((((((...(((((...)))))...((((((...(((((....)))))))))))....((((....(....)(((....))))))).))).)))).))))))......... ( -49.60)
>consensus
UCCGGGCUCAGCGCCACCGGGAUUUGAUCCGCAAACGGCUUUUGCGGCAGCUGCCGCAGCCAUGAAAGCGAACACCGAAAACACAAAGGCUGCGCAGGCAGCCGCUUUGGAGAAGGAGGC
(((.((..........)).)))(((..(((.......((....))(((.((((((((((((..........................))))))...)))))).)))..)))..))).... (-26.38 = -26.97 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:52 2006