Locus 5878

Sequence ID 3R_DroMel_CAF1
Location 15,427,610 – 15,427,717
Length 107
Max. P 0.606214
window9605

overview

Window 5

Location 15,427,610 – 15,427,717
Length 107
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -28.63
Consensus MFE -15.34
Energy contribution -15.89
Covariance contribution 0.56
Combinations/Pair 1.38
Mean z-score -1.75
Structure conservation index 0.54
SVM decision value 0.15
SVM RNA-class probability 0.606214
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15427610 107 + 27905053
GUG-CAUUAUUUAAUGCCUUCUUUCGGUUGUAGAGUCAUUAUAACCCUCUCAUGCGAUGUGAUUAACCGGAAUAUGGAGGGCUUAGGCACUUCGCCCUUUAAGCUCUU
..(-((((....)))))....(((((((((..(((...........)))((((.....)))).)))))))))....((((((((((((.....)))...))))))))) ( -27.60)
>DroSim_CAF1 185603 107 + 1
GUG-CAUUACAUAAUGUCUCCUUUCGGUUGUAGUGUCAUCAUAACCCUCUCCUGCGAUGUAAUUAACCGAAAUAUGGAGGGCUUAGGUACAUCGCCCUUUAAGCUCUU
..(-((((....)))))(((((((((((((...((.((((...............))))))..)))))))))...))))(((((((((.....)))...))))))... ( -25.36)
>DroEre_CAF1 176494 107 + 1
AUG-CCCUAUUUAAUGUGUCCUUUCGGUUGCAGGGUCAUCAUAACCCUCUCGUGUGAUGUGAUCAAUCGGAACAUGGAGGGCUUGGGCACUUCGCCCUUCAAGCUCUU
..(-((((.....((((.(((..(.(((..((((((.......))))((......))))..))).)..)))))))..)))))..((((.....))))........... ( -32.20)
>DroYak_CAF1 201705 107 + 1
AUG-CAUUAUUUAUUUUCCCCUUUCGGUUAUAGUGUCAUUAUAACCCUCUCAUGUGAUGUGAUUAAUCGGAAUAUGGAGGGCUUAGGCACUUCGCCCUUUAAGCUCUU
...-............(((..(((((((((..(..((((..............))))..)...)))))))))...)))((((((((((.....)))...))))))).. ( -26.04)
>DroMoj_CAF1 227355 107 + 1
GUGGCAGCUCUUGAUGAUGUGUUUCUA-UUCAGCGUCAUCAUUACACUCUCCUAUGAUGUGAUCAACCGCAAUAUGGAGGGGCUGGGCACUUCGCCCUUCAAGCUGUU
..(((((((..(((((((((.......-....))))))))).....((((((.(((.((((......)))).)))))))))(..((((.....))))..).))))))) ( -38.50)
>DroAna_CAF1 173304 98 + 1
AUG-UAUUUCUU---------UGUCCAUUCAAGCGUCAUCAUUACCCUCUCCUGCGAUGUCAUCAAUCGCAACAUGGAGGGUCUCGGAACCUCGCCCUUCAAGCUCUU
...-........---------...........(((...((...(((((((..((((((.......))))))....)))))))....))....)))............. ( -22.10)
>consensus
AUG_CAUUACUUAAUGUCUCCUUUCGGUUGUAGCGUCAUCAUAACCCUCUCCUGCGAUGUGAUCAACCGGAAUAUGGAGGGCUUAGGCACUUCGCCCUUCAAGCUCUU
.....................(((((((((......((((...............))))....)))))))))..((((((((...........))))))))....... (-15.34 = -15.89 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:45 2006