Locus 587

Sequence ID 3R_DroMel_CAF1
Location 2,185,061 – 2,185,152
Length 91
Max. P 0.624258
window938

overview

Window 8

Location 2,185,061 – 2,185,152
Length 91
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -16.46
Consensus MFE -10.40
Energy contribution -10.43
Covariance contribution 0.03
Combinations/Pair 1.14
Mean z-score -1.39
Structure conservation index 0.63
SVM decision value 0.19
SVM RNA-class probability 0.624258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2185061 91 + 27905053
ACUUCCA----GCUUAUGGGGUAUCACUCAACUUACUCC--AUUGCAGCAUCCCUUCCUAAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA
.......----(((.((((((((..........))))))--))...))).............(((((((........)))))))............. ( -23.70)
>DroVir_CAF1 4862 93 + 1
AGAUUUUUAAAGCUUU-UUAAUUUA-C--AUUGUAUUUCAAUUUGCAGCAUCCCUUCCUGAAAUUGGCGCGUCCAUUGGCCAGUCUGACGCCUUUGA
......((((((....-........-.--........(((((((.(((.(.....).)))))))))).(((((....((....)).))))))))))) ( -13.10)
>DroSec_CAF1 4302 91 + 1
AUUUCUA----GCUUAUUGGUUAUCCCUUAACUUACUCC--AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA
.......----(((((.(((.................))--).)).))).............(((((((........)))))))............. ( -16.03)
>DroSim_CAF1 4186 91 + 1
AUUUCUA----GCUUAUGGGUUAUCCCUUAAAUUACUCC--AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA
.......----(((.((((..((..........))..))--))...))).............(((((((........)))))))............. ( -17.80)
>DroEre_CAF1 4287 80 + 1
GCUUCUA----G-------CUUAAACCUCAAC----UCU--UUUGCAGCACCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA
.......----(-------((((((.......----...--)))).))).............(((((((........)))))))............. ( -12.90)
>DroYak_CAF1 4289 88 + 1
ACUUUAA----A---ACGUCAUAAACCUCAACUUACUCU--AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA
.......----.---..((((..................--....(((.(.....).)))..(((((((........))))))).))))........ ( -15.20)
>consensus
ACUUCUA____GCUUAUGGGUUAUACCUCAACUUACUCC__AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA
..............................................................(((((((........)))))))............. (-10.40 = -10.43 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:50 2006