| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,372,773 – 15,372,874 |
| Length | 101 |
| Max. P | 0.971241 |
| Location | 15,372,773 – 15,372,874 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 94.53 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -23.73 |
| Energy contribution | -23.10 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15372773 101 + 27905053 AUCGCUCAGCUGAUGAUGAGCUUACCAGGCCAACUAACUGGAGACGAAACCUCCUCCAGUUCCAACUCUUCCAACUCAGGUCCCUAUGGCUCACAUUGCCA ........((.((((.((((((.....((((....((((((((..........)))))))).................)))).....)))))))))))).. ( -24.90) >DroSec_CAF1 125448 100 + 1 AUCGCUCAGCUGAUGAUGAGCUUACCAGGCCAACUAACUGGAGACGA-ACCUCCUCCAGUUCCAACUCUUCCAACUCAGGUCCCUUUGGCCCACAUUGCCA ...(((((........)))))......((((((..((((((((....-.....)))))))).........((......)).....)))))).......... ( -26.70) >DroSim_CAF1 129550 100 + 1 AUCGCUCAGCUGAUGAUGAGCUUACCAGGCCAACUAACUGGAGACGA-ACCUCCUCCAGUUCCAACUCUUUCAACUCAGGUCCCUUUGGCCCACAUUGCCA ...(((((........)))))......((((((..((((((((....-.....))))))))................((....)))))))).......... ( -25.90) >DroEre_CAF1 123234 99 + 1 AUCGCUCAGCUGAUGAUGAGUUUACCAGGCCAACUAACUGGAGGCGA-ACCUCCUCCAGUU-CAACUCUUGCCACUCAGGUCCUUUUGGCUCACAUUACCA ........(.(((((.((((((....(((((....(((((((((...-....)))))))))-.......((.....)))).)))...))))))))))).). ( -26.80) >consensus AUCGCUCAGCUGAUGAUGAGCUUACCAGGCCAACUAACUGGAGACGA_ACCUCCUCCAGUUCCAACUCUUCCAACUCAGGUCCCUUUGGCCCACAUUGCCA ...(((((........)))))......(((((...((((((((..........))))))))................((....)).))))).......... (-23.73 = -23.10 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:29 2006