Locus 5860

Sequence ID 3R_DroMel_CAF1
Location 15,360,303 – 15,360,410
Length 107
Max. P 0.665909
window9586

overview

Window 6

Location 15,360,303 – 15,360,410
Length 107
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 85.80
Mean single sequence MFE -19.95
Consensus MFE -16.75
Energy contribution -17.25
Covariance contribution 0.50
Combinations/Pair 1.05
Mean z-score -1.55
Structure conservation index 0.84
SVM decision value 0.28
SVM RNA-class probability 0.665909
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15360303 107 - 27905053
CACUCAAAGCUCCCCA--CUCCCAUCUCGAAAACCCGCUCCCUCAUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU
................--..((((((.(((..((.(((........))).))..))).)))).))...(((((.(((....)))...)))))................. ( -20.50)
>DroSec_CAF1 113059 109 - 1
CACUCCUCACUCCCCCCACUCCCAUCUCGAAAACCCGCUCCCUCGUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAAUUUUAACAAACU
....................((((((.(((..((.(((........))).))..))).)))).))...(((((.(((....)))...)))))................. ( -20.50)
>DroSim_CAF1 116744 107 - 1
CACUCCACACUCCCCC--CUCCCAUCACAAAAACCCGCUCCCUCGUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU
................--..((((((((((..((.(((........))).))..)))))))).))...(((((.(((....)))...)))))................. ( -24.80)
>DroEre_CAF1 108871 92 - 1
C-----------------AUCCCAACCCAAAAUCCCGCUCCCUCAUACGCGUCCUUGUGAUGUGGUCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU
.-----------------......................((.(((.((((....))))))).))...(((((.(((....)))...)))))................. ( -14.00)
>consensus
CACUCCACACUCCCCC__CUCCCAUCUCAAAAACCCGCUCCCUCAUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU
....................((((((.(((..((.(((........))).))..))).)))).))...(((((.(((....)))...)))))................. (-16.75 = -17.25 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:25 2006