| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,346,625 – 15,346,715 |
| Length | 90 |
| Max. P | 0.595826 |
| Location | 15,346,625 – 15,346,715 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.10 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -10.93 |
| Energy contribution | -12.14 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.595826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15346625 90 - 27905053 UGCACGCAAAUCUCAAGAA-AAGAUUACAGCAACUCCACCU--ACCCUCCCGCCCCUUUUCAACCCUCCCGCCCC----------ACUGAC-AAAGGGGCGUGG .....((.(((((......-.)))))...))..........--.....((((((((((((((.............----------..))).-))))))))).)) ( -20.46) >DroPse_CAF1 133302 81 - 1 UGCACGCAGAGCUCAAGAAAAAGAUUACGGGAACA-CACCUCCAGCCUCCUCCUCC---UGCCUCCUCCUGCUC-------------AGAC------CCCAUGG ........((((((........))...(((((...-.................)))---)).........))))-------------....------....... ( -8.25) >DroSec_CAF1 99489 92 - 1 UGCACGCAAAUCUCAAGAA-AAGAUUACAGCAACUCCACCUCCACCCUCACGCCCUUUUUCCAUCCCACCGCCCC----------ACCGAC-AAAGGGGCGUGG .....((.(((((......-.)))))...)).................(((((((((((((..............----------...)).-))))))))))). ( -18.73) >DroSim_CAF1 103053 92 - 1 UGCACGCAAAUCUCAAGAA-AAGAUUACAGCAACUUCACCUCCACCCUCCCGCCCCUUUUCAAUCCCACCGCCCC----------ACCGAC-AAAGGGGCGUGG .....((.(((((......-.)))))...)).................(((((((((((((..............----------...)).-))))))))).)) ( -19.23) >DroEre_CAF1 94842 98 - 1 UGCACGCAAAUCUCAAGAA-AAGAUUACAGCAACUCCACCU--ACCCGCCCGCCCCUUUUCAAUCCCCCUCUCCC-ACU-CCCACUCCCGC-AAAGGGGCGUGG .....((.(((((......-.)))))...))..........--.....(((((((((((.(..............-...-.........).-))))))))).)) ( -18.27) >DroYak_CAF1 125666 101 - 1 UUCACGCAAAUCUGAAGAA-AAGAUUACAGCAACUCCAACG--ACCCUCCCGCCCCUUUUCAGUCCACCCCCCCCCCCUCCCCCCUCUCACGAAAGGGGCGUGG .....((.(((((......-.)))))...))..........--.....((((((((((((...............................)))))))))).)) ( -20.18) >consensus UGCACGCAAAUCUCAAGAA_AAGAUUACAGCAACUCCACCU__ACCCUCCCGCCCCUUUUCAAUCCCCCCGCCCC__________ACCGAC_AAAGGGGCGUGG ..(((((.(((((........)))))...))....................((((((((.................................))))))))))). (-10.93 = -12.14 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:19 2006