Locus 5830

Sequence ID 3R_DroMel_CAF1
Location 15,278,234 – 15,278,327
Length 93
Max. P 0.779259
window9545

overview

Window 5

Location 15,278,234 – 15,278,327
Length 93
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 74.63
Mean single sequence MFE -16.21
Consensus MFE -2.33
Energy contribution -2.49
Covariance contribution 0.16
Combinations/Pair 1.23
Mean z-score -1.66
Structure conservation index 0.14
SVM decision value 0.55
SVM RNA-class probability 0.779259
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15278234 93 + 27905053
AACUGGGAAUUAAGUAAUAAGGAUUAGUUAAAAAAAAAAGAGUUAGAGUUGCAGAGAAA--GGAA-AGCCCUGGCAAAUGCUUU--UUUACUCAGAUA
..(((((..((((.((((....)))).))))....((((((((.....((((......(--((..-...))).))))..)))))--))).)))))... ( -19.70)
>DroSec_CAF1 30762 94 + 1
AACUAGGAAUUAAGUAAUUAAGAUUAGUUUAAA--AAAGGAGUUAGAGGCGCAGAGAAA--GGAAAAACACUGGCAAAGGCUUUUUUUUAUUCAGAUA
((((((...((((....))))..))))))..((--(((((((((....((.(((.....--.........)))))...)))))))))))......... ( -15.94)
>DroSim_CAF1 31473 94 + 1
AACUAGGAAUUAAGUAAUUAAGAUUAGUUUAAA--AAAAGAGUUACAGGGGCAGAGAAA--GGAAAAACACUGGCGAAGGCUUUUUUUUACUCAGAUA
((((((...((((....))))..))))))....--....((((...((((((...(..(--(........))..)....))))))....))))..... ( -16.30)
>DroEre_CAF1 27062 87 + 1
AACUAGGAAUUAUGCAAUUAAGAUUAGUUUAGA--AGAGG---------GGCAGGAAAAUGGAGAAAAACCUGGCCAAGGGUUUAUUUUCGUCAGCUA
((((((...(((......)))..))))))....--.....---------(((..((...((((((.((((((......)))))).)))))))).))). ( -15.00)
>DroYak_CAF1 30012 84 + 1
AGCUAGGAACCAUGUAAUUUAGAUUAGUUUAGA--AAAAAA--------AACAGAAAAA--GAAAAUGCCCUGGCAAAGGGUUU--UUUCGUCAGAUA
.....................(((..((((...--.....)--------))).......--(((((.(((((.....))))).)--)))))))..... ( -14.10)
>consensus
AACUAGGAAUUAAGUAAUUAAGAUUAGUUUAAA__AAAAGAGUUA_AG_GGCAGAGAAA__GGAAAAACCCUGGCAAAGGCUUU_UUUUACUCAGAUA
((((((...(((......)))..)))))).........................................((((.................))))... ( -2.33 =  -2.49 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:45 2006