Locus 5812

Sequence ID 3R_DroMel_CAF1
Location 15,191,706 – 15,191,802
Length 96
Max. P 0.895989
window9522

overview

Window 2

Location 15,191,706 – 15,191,802
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 95.52
Mean single sequence MFE -18.58
Consensus MFE -15.42
Energy contribution -16.42
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.83
SVM decision value 0.99
SVM RNA-class probability 0.895989
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15191706 96 - 27905053
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUUGCUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((....(((((..(((((((..........)))))))...))))).(((....))))))))))))..................... ( -19.50)
>DroSec_CAF1 115148 95 - 1
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((....(((((..(((((((.......-..)))))))...))))).(((....))))))))))))..................... ( -19.60)
>DroSim_CAF1 117689 95 - 1
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((....(((((..(((((((.......-..)))))))...))))).(((....))))))))))))..................... ( -19.60)
>DroEre_CAF1 113800 95 - 1
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAACUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((.....((((..(((((((.......-..)))))))...))))..(((....))))))))))))..................... ( -19.20)
>DroYak_CAF1 120436 95 - 1
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((....(((((..(((((((.......-..)))))))...))))).(((....))))))))))))..................... ( -19.60)
>DroAna_CAF1 111078 85 - 1
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUU----------CUGCUGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((......(((..(((((((.......-..)))))))....----------.))).)))))))))..................... ( -14.00)
>consensus
CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU_CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG
...(((((((((.....((((..(((((((..........)))))))...))))..(((....))))))))))))..................... (-15.42 = -16.42 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:23 2006