Locus 581

Sequence ID	3R_DroMel_CAF1
Location	2,169,978 – 2,170,068
Length	90
Max. P	0.626050

overview

Window 7

Location	2,169,978 – 2,170,068
Length	90
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	75.57
Mean single sequence MFE	-13.91
Consensus MFE	-2.61
Energy contribution	-3.01
Covariance contribution	0.40
Combinations/Pair	1.45
Mean z-score	-1.61
Structure conservation index	0.19
SVM decision value	0.19
SVM RNA-class probability	0.626050
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2169978 90 + 27905053
CACUAACAAAAGCACACUAAAAAGAUCCAAAUAUAUA---GAGGAUAUCUUUGUCUUAAUAAAUUGGAUCCGAAUAGUAUGUACUCAACUACG
...........(((.((((....(((((((.......---.((((((....))))))......)))))))....)))).)))........... ( -17.04)
>DroSec_CAF1 312090 91 + 1
CACUAACAAAA-CACAUUAAAAAGAUCGAAGUAUAUA-AGAAGGAUUACUAUUUCUUAAUAACUUAGAUCUGAAUAGUAUGCACUCAACUACG
...........-((.((((...(((((.((((...((-(((((........)))))))...)))).)))))...)))).))............ ( -14.50)
>DroSim_CAF1 328248 91 + 1
CACUAACAAAA-CACAUUAAAAAGAUCCAAGUAUAUA-AGAAGGAUUACUAUUUCUUAAUAACUUAGAUCUGAAUAGUAUGCACUCAACUACG
...........-((.((((...(((((.((((...((-(((((........)))))))...)))).)))))...)))).))............ ( -14.50)
>DroEre_CAF1 315662 92 + 1
CUCUAGGAAAU-CACUCUUAACUCAUUCAGGCAUAUUGAAAAAUAUUACAUUGCCUUAAGAAAUAGGAUCCGAAUAGUGUGUACUCAUUAACG
.....(((...-...(((((..((.((.(((((((((....))))......))))).))))..))))))))...(((((......)))))... ( -14.10)
>DroYak_CAF1 316447 92 + 1
CACUAAAAAAA-CACUCUAAAACCAUCGAUGUACAUAGAAAAGGAAUAAAUGGUUUUAAUAAAUUGGAUCCGAACAGUAUUUACUCAACUAAG
...........-.....(((((((((..((...(........)..))..)))))))))....((((........))))............... (  -9.40)
>consensus
CACUAACAAAA_CACACUAAAAAGAUCCAAGUAUAUA_AAAAGGAUUACUUUGUCUUAAUAAAUUGGAUCCGAAUAGUAUGUACUCAACUACG
..............................((((((......(((((...................))))).....))))))........... ( -2.61 =  -3.01 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:38 2006