Locus 5801

Sequence ID 3R_DroMel_CAF1
Location 15,151,561 – 15,151,658
Length 97
Max. P 0.999067
window9503

overview

Window 3

Location 15,151,561 – 15,151,658
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.53
Mean single sequence MFE -27.34
Consensus MFE -24.56
Energy contribution -24.40
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 0.90
SVM decision value 3.35
SVM RNA-class probability 0.999067
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15151561 97 - 27905053
UAAAAAAUCGCGAAUGAUUA-AGAAUCGCGGCACCGUUAGUUCCCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA
........(((((.......-....)))))((..((..((......))..))(((((((.(((..(((......)))..))).))))))).....)). ( -27.60)
>DroSec_CAF1 75162 96 - 1
UAA-AAAUCGCGAAUGAUUA-AGAAUUGCGGCACCCUUAGUUCGCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA
...-.....(((........-.((((((.((...)).)))))).........(((((((.(((..(((......)))..))).)))))))....))). ( -28.20)
>DroSim_CAF1 74212 96 - 1
UAA-AAAUCGCGAAUGAUUA-AGAAUCGCGGCACCCUUAGUUCCCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCC
...-.....((((.......-....))))(((......((......))....(((((((.(((..(((......)))..))).))))))).....))) ( -25.20)
>DroEre_CAF1 74450 95 - 1
UAA-AAAA--CGAAUGAUUAAAGAAUCGCGGCACCGUUAGUUCUCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA
...-....--.....((((....))))((((...((..((......))..))(((((((.(((..(((......)))..))).)))))))...)))). ( -27.50)
>DroYak_CAF1 76780 95 - 1
UAA-AAAA--CGAAUGAUUAAAGAAUCGCGGCACCGUUAGUUCCCUCUGUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA
...-....--.....((((....))))((((...((.(((......))).))(((((((.(((..(((......)))..))).)))))))...)))). ( -28.20)
>consensus
UAA_AAAUCGCGAAUGAUUA_AGAAUCGCGGCACCGUUAGUUCCCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA
...............((((....))))((((.......((......))....(((((((.(((..(((......)))..))).)))))))...)))). (-24.56 = -24.40 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:05 2006