| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,151,172 – 15,151,286 |
| Length | 114 |
| Max. P | 0.713013 |
| Location | 15,151,172 – 15,151,286 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.60 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -15.23 |
| Energy contribution | -14.96 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15151172 114 - 27905053 AAUCAGCA---ACAAAAACAUCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUUUCAGUCCCAGGAAAAGCGCUCAUU ....(((.---...........(((((((((............)))))))))....((((((((((((..............)))))))))).....((....))...))))).... ( -20.84) >DroPse_CAF1 84419 101 - 1 AAGGAGCA---GCAAAAGCAGCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUUGUGCAGGUGAGUUUUACUCUAAAA------------- ..((((..---((....)).(((((((((((............)))))))))....))((((((((((..((.......)).))))))))))....))))....------------- ( -20.20) >DroYak_CAF1 76402 114 - 1 AAUCCACA---ACAAAAACACCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACGGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUUAACUUCCCAGAAAAAGCGCCCAUU ........---...........(((((((((............)))))))))...(((((((((((((..............))))))))))...(((........))).))).... ( -18.94) >DroMoj_CAF1 86898 104 - 1 -CGAAGCA---ACAAUAACAGCAAUAAACAUGCAGUGGAUUAAAUGUUUAUUAACCGCAUUUAUUUGCUUCACAAUCAUUGUGCAGGUAAGUUCUACUCUC---------UCUCUCC -.......---.........(((.......)))((((((.(((((((.........)))))))(((((((((((.....)))).))))))).))))))...---------....... ( -17.80) >DroAna_CAF1 73288 101 - 1 CAUCAUCCACCUCCA-GAAAUCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUGGUGG------GG--------CAU- .....((((((....-......(((((((((............)))))))))......((((((((((..............)))))))))))))))------).--------...- ( -25.44) >DroPer_CAF1 81029 101 - 1 AAGGAGCA---GCAAAAGCAGCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUUGUGCAGGUGAGUUUUACUCUAAAA------------- ..((((..---((....)).(((((((((((............)))))))))....))((((((((((..((.......)).))))))))))....))))....------------- ( -20.20) >consensus AAGCAGCA___ACAAAAACAGCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUUUUACUCUCA_A_________CAU_ ......................(((((((((............)))))))))......((((((((((..............))))))))))......................... (-15.23 = -14.96 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:04 2006